/// <summary>
/// Runs the tasks
/// </summary>
/// <param name="tasksToRun">number of tasks to be ran in a range collection</param>
/// <param name="taskCount">task count</param>
public override void RunTasks(RangeCollection tasksToRun, long taskCount)
{
ISequenceParser parser = SequenceParsers.FindParserByFileName(InputFile.FullName);
var allTheWorkQuery = parser.Parse();
var myWorkAndAnIndex = SpecialFunctions.DivideWork(allTheWorkQuery, tasksToRun, taskCount, 1, new RangeCollection());
var myUniqueResultFileName = GetFileTaskFileName(tasksToRun.ToString());
float gcCount = 0;
long seqLength = 0;
using (TextWriter writer = File.CreateText(myUniqueResultFileName))
{
// loop all sequences in current task
foreach (var numberAndIndex in myWorkAndAnIndex)
{
writer.WriteLine(">" + numberAndIndex.Key.ID);
foreach (byte val in numberAndIndex.Key)
{
seqLength++;
switch (val)
{
case (byte)'G':
case (byte)'g':
case (byte)'C':
case (byte)'c':
gcCount++;
break;
}
}
if (gcCount > 0)
{
writer.Write(((gcCount / (float)seqLength) * 100) + "%");
}
else
{
writer.Write(gcCount + "%");
}
seqLength = 0;
gcCount = 0;
writer.WriteLine();
}
}
}
