/// <summary>
/// Invalidate Sparse sequence Count
/// </summary>
/// <param name="sparseSeq">Sparse Sequence</param>
private static void ValidateSparseSequenceCount(SparseSequence sparseSeq)
{
Assert.AreEqual(sparseSeq.Count, 0);
sparseSeq.Count = 5;
Assert.IsNull(sparseSeq[0]);
Assert.IsNull(sparseSeq[1]);
Assert.IsNull(sparseSeq[2]);
Assert.IsNull(sparseSeq[3]);
Assert.IsNull(sparseSeq[4]);
sparseSeq[2] = Alphabets.DNA.G;
Assert.AreEqual(sparseSeq.Count, 5);
Assert.IsNull(sparseSeq[0]);
Assert.IsNull(sparseSeq[1]);
Assert.AreSame(sparseSeq[2], Alphabets.DNA.G);
Assert.IsNull(sparseSeq[3]);
Assert.IsNull(sparseSeq[4]);
sparseSeq.Insert(2, 'A');
Assert.AreEqual(sparseSeq.Count, 6);
Assert.IsNull(sparseSeq[0]);
Assert.IsNull(sparseSeq[1]);
Assert.AreSame(sparseSeq[2], Alphabets.DNA.A);
Assert.AreSame(sparseSeq[3], Alphabets.DNA.G);
Assert.IsNull(sparseSeq[4]);
Assert.IsNull(sparseSeq[5]);
sparseSeq.Insert(4, Alphabets.DNA.C);
Assert.AreEqual(sparseSeq.Count, 7);
Assert.IsNull(sparseSeq[0]);
Assert.IsNull(sparseSeq[1]);
Assert.AreSame(sparseSeq[2], Alphabets.DNA.A);
Assert.AreSame(sparseSeq[3], Alphabets.DNA.G);
Assert.AreSame(sparseSeq[4], Alphabets.DNA.C);
Assert.IsNull(sparseSeq[5]);
Assert.IsNull(sparseSeq[6]);
}
/// <summary>
/// Invalidate Sparse sequence Insert(SeqItem)
/// </summary>
/// <param name="sparseSeq">Sparse Sequence</param>
private static void ValidateSparseSequenceInsertSeqItem(SparseSequence sparseSeq)
{
sparseSeq.Insert(0, Alphabets.DNA.G);
Assert.AreEqual(sparseSeq.Count, 3);
sparseSeq.Insert(sparseSeq.Count, Alphabets.DNA.G);
Assert.AreEqual(sparseSeq.Count, 4);
try
{
sparseSeq.Insert(-1, Alphabets.DNA.A);
Assert.Fail();
}
catch (ArgumentException)
{
Assert.AreEqual(sparseSeq.Count, 4);
}
try
{
sparseSeq.Insert(sparseSeq.Count + 1, Alphabets.DNA.A);
Assert.Fail();
}
catch (ArgumentException)
{
Assert.AreEqual(sparseSeq.Count, 4);
}
try
{
sparseSeq.Insert(0, Alphabets.RNA.U);
Assert.Fail();
}
catch (ArgumentException)
{
Assert.AreEqual(sparseSeq.Count, 4);
}
}
/// <summary>
/// Invalidate ReadOnly Sparse sequence
/// </summary>
/// <param name="sparseSeq">Sparse Sequence</param>
private static void InvalidateReadOnlySparseSequence(SparseSequence sparseSeq)
{
try
{
sparseSeq.Add(Alphabets.DNA.A);
Assert.Fail();
}
catch (InvalidOperationException)
{
Assert.AreEqual(sparseSeq.Count, 1);
}
try
{
sparseSeq.Clear();
Assert.Fail();
}
catch (InvalidOperationException)
{
Assert.AreEqual(sparseSeq.Count, 1);
}
try
{
sparseSeq.Insert(0, 'C');
Assert.Fail();
}
catch (InvalidOperationException)
{
Assert.AreEqual(sparseSeq.Count, 1);
}
try
{
sparseSeq.Insert(0, Alphabets.DNA.A);
Assert.Fail();
}
catch (InvalidOperationException)
{
Assert.AreEqual(sparseSeq.Count, 1);
}
try
{
sparseSeq.InsertRange(0, "CGA");
Assert.Fail();
}
catch (InvalidOperationException)
{
Assert.AreEqual(sparseSeq.Count, 1);
}
try
{
sparseSeq.Remove(Alphabets.DNA.A);
Assert.Fail();
}
catch (InvalidOperationException)
{
Assert.AreEqual(sparseSeq.Count, 1);
}
try
{
sparseSeq.RemoveAt(0);
Assert.Fail();
}
catch (InvalidOperationException)
{
Assert.AreEqual(sparseSeq.Count, 1);
}
try
{
sparseSeq.RemoveRange(0, 2);
Assert.Fail();
}
catch (InvalidOperationException)
{
Assert.AreEqual(sparseSeq.Count, 1);
}
try
{
sparseSeq.Replace(0, 'C');
Assert.Fail();
}
catch (InvalidOperationException)
{
Assert.AreEqual(sparseSeq.Count, 1);
Assert.AreSame(sparseSeq[0], Alphabets.DNA.A);
}
try
{
sparseSeq.Replace(0, Alphabets.DNA.C);
Assert.Fail();
}
catch (InvalidOperationException)
{
Assert.AreEqual(sparseSeq.Count, 1);
Assert.AreSame(sparseSeq[0], Alphabets.DNA.A);
}
try
{
sparseSeq.ReplaceRange(0, "G");
Assert.Fail();
}
catch (InvalidOperationException)
{
Assert.AreEqual(sparseSeq.Count, 1);
Assert.AreSame(sparseSeq[0], Alphabets.DNA.A);
}
}
