protected override void Context()
{
base.Context();
_simulationRunResults = new SimulationRunResults(true, Enumerable.Empty <SolverWarning>(),
DomainHelperForSpecs.IndividualSimulationDataRepositoryFor("Sim"));
_simulation = new ModelCoreSimulation();
A.CallTo(_simModelManager).WithReturnType <SimulationRunResults>().Returns(_simulationRunResults);
}
protected override void Because()
{
var task = Task.Run(() => sut.RunSimulation(_simulation));
//needs to sleep so that the action actually starts
Thread.Sleep(100);
sut.StopSimulation();
_runResults = task.Result;
}
private void copyResultsToSimulation(SimulationRunResults results, IMoBiSimulation simulation)
{
var resultsResults = results.Results;
if (simulation.Results != null)
{
simulation.HistoricResults.Add(simulation.Results);
}
setMolecularWeight(simulation, resultsResults);
simulation.Results = resultsResults;
}
private void showWarningsIfAny(SimulationRunResults results)
{
if (!results.Warnings.Any())
{
return;
}
using (var presenter = _applicationController.Start <ISolverMessagePresenter>())
{
presenter.Show(results.Warnings);
}
}
private IInfoCommand getSimulationResultLabel(SimulationRunResults results)
{
var command = new OSPSuiteInfoCommand {
Description = simulationLabelDescription(results)
};
if (results.Warnings.Any())
{
command.Comment = AppConstants.Commands.SimulationLabelComment(results.Warnings.Count());
}
return(command);
}
private IReadOnlyCollection <ScaleDivisor> computerScaleDivisorBasedOn(SimulationRunResults results)
{
if (!results.Success)
{
return(new List <ScaleDivisor>());
}
var query = from column in results.Results
let quantityPath = pathWithoutSimulationName(column.QuantityInfo.PathAsString)
let moleculeAmount = _allMoleculeAmounts[quantityPath]
where moleculeAmount != null
select newScaleDivisor(quantityPath, column);
return(query.ToList());
}
private string simulationLabelDescription(SimulationRunResults results)
{
string terminationString;
if (results.Success)
{
terminationString = "successful";
}
else
{
terminationString = results.Warnings.Any() ? "failed" : "aborted";
}
return($"simulation run {terminationString}");
}
protected override void Context()
{
base.Context();
_simulation = new MoBiSimulation();
_simModelManager = A.Fake <ISimModelManager>();
_outputSelections = new OutputSelections();
_drug = new MoleculeBuilder().WithName("DRUG");
_drug.AddParameter(new Parameter().WithName(AppConstants.Parameters.MOLECULAR_WEIGHT).WithFormula(new ConstantFormula(400)));
_outputSelections.AddOutput(new QuantitySelection("A", QuantityType.Drug));
_simulation.BuildConfiguration = new MoBiBuildConfiguration
{
SimulationSettings = new SimulationSettings
{
OutputSelections = _outputSelections
},
Molecules = new MoleculeBuildingBlock
{
_drug
}
};
A.CallTo(() => _simModelManagerFactory.Create()).Returns(_simModelManager);
_oldResults = new DataRepository("OLD");
_simulation.Results = _oldResults;
_newResults = new DataRepository("NEW");
_simulationResults = new SimulationRunResults(success: true, warnings: Enumerable.Empty <SolverWarning>(), results: _newResults);
A.CallTo(() => _simModelManager.RunSimulation(_simulation)).Returns(_simulationResults);
var baseGrid = new BaseGrid("Time", DomainHelperForSpecs.TimeDimension);
_concentrationColumn = new DataColumn("Drug", DomainHelperForSpecs.ConcentrationDimension, baseGrid);
_fractionColumn = new DataColumn("Fraction", DomainHelperForSpecs.FractionDimension, baseGrid);
_newResults.Add(_concentrationColumn);
_newResults.Add(_fractionColumn);
A.CallTo(() => _keyPathMapper.MoleculeNameFrom(_concentrationColumn)).Returns(_drug.Name);
}
protected override void Because()
{
_simulationResult = sut.RunSimulation();
}
protected override void Context()
{
var entityPathFactory = new EntityPathResolverForSpecs();
_objectPathFactory = new ObjectPathFactory(new AliasCreator());
_simulation = A.Fake <IModelCoreSimulation>().WithName("Sim");
_simModelManager = A.Fake <ISimModelManager>();
_containerTask = A.Fake <IContainerTask>();
_options = new ScaleDivisorOptions();
_moleculeAmountCache = new PathCache <IMoleculeAmount>(entityPathFactory);
var rootContainer = new ARootContainer().WithName(_simulation.Name)
.WithContainerType(ContainerType.Simulation);
_simulation.Model.Root = rootContainer;
_moleculeAmount1 = new MoleculeAmount().WithName("M1");
_moleculeAmount2 = new MoleculeAmount().WithName("M2");
rootContainer.Add(_moleculeAmount1);
rootContainer.Add(_moleculeAmount2);
_moleculeAmountCache.Add(_moleculeAmount1);
_moleculeAmountCache.Add(_moleculeAmount2);
_molecule1Path = entityPathFactory.PathFor(_moleculeAmount1);
_molecule2Path = entityPathFactory.PathFor(_moleculeAmount2);
_originalResults = new DataRepository();
_simulation.Results = _originalResults;
var baseGrid = new BaseGrid("Time", Constants.Dimension.NO_DIMENSION)
{
Values = new[] { 0f, 1f, 2f, 3f }
};
_originalDataColumn = new DataColumn("M1", Constants.Dimension.NO_DIMENSION, baseGrid)
{
Values = new[] { 0f, 10f, 20f, 30f }
};
_originalDataColumn.QuantityInfo.Path = _objectPathFactory.CreateAbsoluteObjectPath(_moleculeAmount1);
_originalResults.Add(_originalDataColumn);
A.CallTo(_containerTask).WithReturnType <PathCache <IMoleculeAmount> >().Returns(_moleculeAmountCache);
var simResults = new DataRepository();
var baseGrid2 = new BaseGrid("Time", Constants.Dimension.NO_DIMENSION)
{
Values = new[] { 0f, 1f, 2f, 3f }
};
var res1 = new DataColumn("M1", Constants.Dimension.NO_DIMENSION, baseGrid2)
{
Values = new[] { 0f, 10f, 20f, 30f }
};
res1.QuantityInfo.Path = _objectPathFactory.CreateAbsoluteObjectPath(_moleculeAmount1);
simResults.Add(res1);
var res2 = new DataColumn("M2", Constants.Dimension.NO_DIMENSION, baseGrid2)
{
Values = new[] { 0f, 11f, 12f, 13f }
};
res2.QuantityInfo.Path = _objectPathFactory.CreateAbsoluteObjectPath(_moleculeAmount2);
simResults.Add(res2);
var simulationRunResults = new SimulationRunResults(true, Enumerable.Empty <ISolverWarning>(), simResults);
A.CallTo(() => _simModelManager.RunSimulation(_simulation)).Returns(simulationRunResults);
sut = new ScaleDivisorCalculator(_simModelManager, _containerTask, _objectPathFactory);
}
protected override void Because()
{
_res = sut.RunSimulation(_simulation);
}
