public void validate_deserialized_class_is_correct()
{
var i = new SimulationInput {
N = 10
};
var iCloned = i.Clone();
Assert.AreEqual(iCloned.N, 10);
}
/// <summary>
/// Method to overwrite data in SimulationInput. Used in MC CommandLineApplication
/// paramsweep and paramsweepdelta.
/// </summary>
/// <param name="data">base SimulationInput</param>
/// <param name="inputParameter">parameter in SimulationInput to be overwritten</param>
/// <param name="value">value of parameter</param>
/// <returns>updated SimulationInput with new data</returns>
public static SimulationInput WithValue(this SimulationInput data, string inputParameter, double value)
{
var result = data.Clone();
// append sweep value to the output name
result.OutputName += ("_" + inputParameter + "_" + String.Format("{0:G15}", value));
var parameterString = inputParameter.ToLower().TrimEnd("0123456789".ToCharArray());
var regionString = inputParameter.Substring(parameterString.Length);
int regionIndex;
if (!int.TryParse(regionString, out regionIndex))
{
regionIndex = -1;
}
switch (parameterString)
{
case "nphot":
result.N = (long)value;
break;
case "mua":
if (regionIndex >= 0 && result.TissueInput.Regions.Count() > regionIndex)
{
result.TissueInput.Regions[regionIndex].RegionOP.Mua = value;
}
break;
case "mus":
if (regionIndex >= 0 && result.TissueInput.Regions.Count() > regionIndex)
{
result.TissueInput.Regions[regionIndex].RegionOP.Mus = value;
}
break;
case "g":
if (regionIndex >= 0 && result.TissueInput.Regions.Count() > regionIndex)
{
result.TissueInput.Regions[regionIndex].RegionOP.G = value;
}
break;
case "n":
if (regionIndex >= 0 && result.TissueInput.Regions.Count() > regionIndex)
{
result.TissueInput.Regions[regionIndex].RegionOP.N = value;
}
break;
case "d":
var multiLayerTissueInput = result.TissueInput as MultiLayerTissueInput;
if (multiLayerTissueInput != null && regionIndex >= 0 && multiLayerTissueInput.Regions.Count() > regionIndex)
{
var layerRegion = (LayerTissueRegion)multiLayerTissueInput.Regions.Skip(regionIndex).First();
// keep a separate copy of the range before we modify it
var previousRange = layerRegion.ZRange.Clone();
// modify the target layer thickness by specifying Stop (which internally updtes Delta as well)
layerRegion.ZRange.Stop = layerRegion.ZRange.Start + value;
// then, update the rest of the following layers with an adjusted thickness
var changeInThickness = layerRegion.ZRange.Delta - previousRange.Delta;
foreach (var region in multiLayerTissueInput.Regions.Skip(regionIndex + 1).Select(r => (LayerTissueRegion)r))
{
region.ZRange = new DoubleRange(
region.ZRange.Start + changeInThickness,
region.ZRange.Stop + changeInThickness,
region.ZRange.Count);
}
}
break;
case "source_x":
case "source_y":
case "source_z":
Action <Position> sourcePositionModifier = null;
switch (parameterString)
{
case "source_x":
sourcePositionModifier = p => p.X = value;
break;
case "source_y":
sourcePositionModifier = p => p.Y = value;
break;
case "source_z":
sourcePositionModifier = p => p.Z = value;
break;
}
Position sourcePosition = null;
dynamic sourceInput = result.SourceInput;
switch (result.SourceInput.SourceType)
{
case "IsotropicPoint":
case "DirectionalPoint":
case "CustomPoint":
sourcePosition = (Position)sourceInput.PointLocation;
break;
case "IsotropicLine":
case "DirectionalLine":
case "CustomLine":
case "DirectionalCircular":
case "CustomCircular":
case "DirectionalElliptical":
case "CustomElliptical":
case "DirectionalRectangular":
case "CustomRectangular":
case "LambertianSurfaceEmittingSpherical":
case "CustomSurfaceEmittingSpherical":
case "LambertianSurfaceEmittingCubiodal":
case "LambertianSurfaceEmittingTubular":
case "LambertianSurfaceEmittingCylindricalFiber":
case "IsotropicVolumetricCuboidal":
case "CustomVolumetricCubiodal":
case "IsotropicVolumetricEllipsoidal":
case "CustomVolumetricEllipsoidal":
default:
sourcePosition = (Position)sourceInput.TranslationFromOrigin;
break;
}
sourcePositionModifier(sourcePosition);
break;
case "inclusion_position_x":
case "inclusion_position_y":
case "inclusion_position_z":
Action <Position> inclusionPositionModifier = null;
switch (parameterString)
{
case "inclusion_position_x":
inclusionPositionModifier = p => p.X = value;
break;
case "inclusion_position_y":
inclusionPositionModifier = p => p.Y = value;
break;
case "inclusion_position_z":
inclusionPositionModifier = p => p.Z = value;
break;
}
dynamic inclusionRegion = null;
switch (result.TissueInput.TissueType)
{
case "SingleEllipsoid":
inclusionRegion = ((SingleEllipsoidTissueInput)result.TissueInput).EllipsoidRegion;
//var singleEllipsoidTissueInput = (SingleEllipsoidTissueInput) result.TissueInput;
//inclusionPosition = ((EllipsoidTissueRegion)singleEllipsoidTissueInput.EllipsoidTissueRegion).Center;
break;
default:
throw new ArgumentOutOfRangeException();
}
inclusionPositionModifier(inclusionRegion.Center); // dynamic binding...works?
break;
case "inclusion_radius_x":
case "inclusion_radius_y":
case "inclusion_radius_z":
dynamic tissueInputWithRadius = result.TissueInput;
switch (result.TissueInput.TissueType)
{
case "SingleEllipsoid":
switch (parameterString)
{
case "inclusion_radius_x":
((EllipsoidTissueRegion)tissueInputWithRadius.EllipsoidRegion).Dx = value;
break;
case "inclusion_radius_y":
((EllipsoidTissueRegion)tissueInputWithRadius.EllipsoidRegion).Dy = value;
break;
case "inclusion_radius_z":
((EllipsoidTissueRegion)tissueInputWithRadius.EllipsoidRegion).Dz = value;
break;
}
break;
default:
throw new ArgumentOutOfRangeException();
}
break;
//case InputParameterType.XSourcePosition:
// result.source.beam_center_x = value;
// break;
// todo: add Y source position to infiles/siRegionOP.Mulation capabilities.
// be careful about rectangle distribution of source
//case InputParameterType.YSourcePosition:
// result.source.beam_center_y = value;
// break;
//case InputParameterType.XEllipsePosition:
// result.tissptr.ellip_x = value;
// break;
//case InputParameterType.YEllipsePosition:
// result.tissptr.ellip_y = value;
// break;
//case InputParameterType.ZEllipsePosition:
// result.tissptr.ellip_z = value;
// break;
//case InputParameterType.XEllipseRadius:
// result.tissptr.ellip_rad_x = value;
// break;
//case InputParameterType.YEllipseRadius:
// result.tissptr.ellip_rad_y = value;
// break;
//case InputParameterType.ZEllipseRadius:
// result.tissptr.ellip_rad_z = value;
// break;
}
return(result);
}