private static void Main(string[] args)
{
//test data
//var sequence1 = new[] { 'C', 'G', 'T', 'G', 'A', 'A', 'T', 'T', 'C', 'A', 'T' };
//var sequence2 = new[] { 'G', 'A', 'C', 'T', 'T', 'A', 'C' };
//var sequence1 = new[] {'G', 'A', 'C', 'T', 'A', 'C'};
//var sequence2 = new[] {'A', 'C', 'G', 'C'};
//var sequence1 = new[] { 'A', 'C', 'A', 'C', 'T'};
//var sequence2 = new[] { 'A', 'C', 'T' };
var sequence1 = new[] { 'c', 'c', 'a', 't', 'c', 'a', 'a', 'a', 'g', 'a', 'g', 'a', 'g', 'a', 'a', 'a', 'g', 'a', 'g' };
var sequence2 = new[] { 'g', 'c', 'c', 'a', 't', 'c', 'a', 'a', 'a', 'g', 'a', 'g', 'a', 'g', 'a', 'g' };
//var sequence1 = new[] { 'G', 'A' };
//var sequence2 = new[] {'G', 'C'};
var sequenceGrid = new SequenceGridNucleotide(sequence1, sequence2);
sequenceGrid.Initialize();
sequenceGrid.FillMatrix();
sequenceGrid.ExecuteTraceback();
var alignedSequence = sequenceGrid.AlignedSequence();
PrintMatrix(sequence1, sequence2, sequenceGrid);
PrintSequenceAligned(alignedSequence.ToList());
PrintPath(sequenceGrid);
}
public ActionResult Execute(SequenceAlignerModel model)
{
var sequenceGrid = new SequenceGridNucleotide(model.Sequence1.ToCharArray(), model.Sequence2.ToCharArray());
sequenceGrid.Initialize();
sequenceGrid.FillMatrix();
sequenceGrid.ExecuteTraceback();
var alignedSequence = sequenceGrid.AlignedSequence().ToList();
for (int i = 0; i < alignedSequence.Count(); i++)
{
model.Sequence1Aligned += alignedSequence[i].Key + " ";
}
for (int i = 0; i < alignedSequence.Count(); i++)
{
model.Sequence2Aligned += alignedSequence[i].Value + " ";
}
return(PartialView("DnaGlobal", model));
}
public void When()
{
_sequenceGridNucleotide = new SequenceGridNucleotide(_seq1, _seq2);
_sequenceGridNucleotide.Initialize();
_sequenceGridNucleotide.FillMatrix();
}