/// <summary>
/// Initializes a new instance of the <see cref="SearchSettingsViewModel"/> class.
/// Initializes from <see cref="Models.MsPfParameters" />, MSPathFinder parameters.
/// </summary>
/// <param name="dialogService">Dialog service for opening dialogs from view model</param>
/// <param name="mspfParameters">The MSPathFinder parameters.</param>
public SearchSettingsViewModel(IMainDialogService dialogService, MsPfParameters mspfParameters) : this(dialogService)
{
if (mspfParameters == null)
{
return;
}
SearchModifications.AddRange(
mspfParameters.Modifications.Select(
searchMod => new SearchModificationViewModel(this.dialogService)
{
SearchModification = searchMod
}));
MinSequenceLength = mspfParameters.MinSequenceLength;
MaxSequenceLength = mspfParameters.MaxSequenceLength;
MinSequenceMass = mspfParameters.MinSequenceMass;
MaxSequenceMass = mspfParameters.MaxSequenceMass;
MinPrecursorIonCharge = mspfParameters.MinPrecursorIonCharge;
MaxPrecursorIonCharge = mspfParameters.MaxPrecursorIonCharge;
MinProductIonCharge = mspfParameters.MinProductIonCharge;
MaxProductIonCharge = mspfParameters.MaxPrecursorIonCharge;
PrecursorIonToleranceValue = mspfParameters.PrecursorTolerancePpm.GetValue();
ProductIonToleranceValue = mspfParameters.ProductIonTolerancePpm.GetValue();
MaxDynamicModificationsPerSequence =
mspfParameters.MaxDynamicModificationsPerSequence;
}
// ReSharper disable once UnusedMember.Local
private void GenerateSequenceGraph()
{
sequenceGraph = GraphXSequenceGraph.Create(
new AminoAcidSet(SearchModifications, MaxDynamicModifications),
string.Empty,
SearchModifications.ToList());
if (sequenceGraph == null)
{
return;
}
var graph = sequenceGraph.DataGraph;
Graph = graph;
SequenceGraphArea.LogicCore.Graph = graph;
SequenceGraphArea.ShowAllEdgesLabels();
SequenceGraphArea.GenerateGraph(true);
}
