Пример #1
0
        public void test_L3_SpeciesReference_createWithNS()
        {
            XMLNamespaces xmlns = new  XMLNamespaces();

            xmlns.add("http://www.sbml.org", "testsbml");
            SBMLNamespaces sbmlns = new  SBMLNamespaces(3, 1);

            sbmlns.addNamespaces(xmlns);
            SpeciesReference sr = new  SpeciesReference(sbmlns);

            assertTrue(sr.getTypeCode() == libsbml.SBML_SPECIES_REFERENCE);
            assertTrue(sr.getMetaId() == "");
            assertTrue(sr.getNotes() == null);
            assertTrue(sr.getAnnotation() == null);
            assertTrue(sr.getLevel() == 3);
            assertTrue(sr.getVersion() == 1);
            assertTrue(sr.getNamespaces() != null);
            assertTrue(sr.getNamespaces().getLength() == 2);
            assertTrue(sr.getId() == "");
            assertTrue(sr.getName() == "");
            assertTrue(sr.getSpecies() == "");
            assertEquals(true, isnan(sr.getStoichiometry()));
            assertTrue(sr.getConstant() == false);
            assertEquals(false, sr.isSetId());
            assertEquals(false, sr.isSetName());
            assertEquals(false, sr.isSetSpecies());
            assertEquals(false, sr.isSetStoichiometry());
            assertEquals(false, sr.isSetConstant());
            sr = null;
        }
Пример #2
0
        public void test_L3_Reaction_createWithNS()
        {
            XMLNamespaces xmlns = new  XMLNamespaces();

            xmlns.add("http://www.sbml.org", "testsbml");
            SBMLNamespaces sbmlns = new  SBMLNamespaces(3, 1);

            sbmlns.addNamespaces(xmlns);
            Reaction r = new  Reaction(sbmlns);

            assertTrue(r.getTypeCode() == libsbml.SBML_REACTION);
            assertTrue(r.getMetaId() == "");
            assertTrue(r.getNotes() == null);
            assertTrue(r.getAnnotation() == null);
            assertTrue(r.getLevel() == 3);
            assertTrue(r.getVersion() == 1);
            assertTrue(r.getNamespaces() != null);
            assertTrue(r.getNamespaces().getLength() == 2);
            assertTrue(r.getId() == "");
            assertTrue(r.getName() == "");
            assertTrue(r.getCompartment() == "");
            assertTrue(r.getFast() == false);
            assertTrue(r.getReversible() == true);
            assertEquals(false, r.isSetId());
            assertEquals(false, r.isSetName());
            assertEquals(false, r.isSetCompartment());
            assertEquals(false, r.isSetFast());
            assertEquals(false, r.isSetReversible());
            r = null;
        }
Пример #3
0
        public void test_L3_Parameter_createWithNS()
        {
            XMLNamespaces xmlns = new  XMLNamespaces();

            xmlns.add("http://www.sbml.org", "testsbml");
            SBMLNamespaces sbmlns = new  SBMLNamespaces(3, 1);

            sbmlns.addNamespaces(xmlns);
            Parameter p = new  Parameter(sbmlns);

            assertTrue(p.getTypeCode() == libsbml.SBML_PARAMETER);
            assertTrue(p.getMetaId() == "");
            assertTrue(p.getNotes() == null);
            assertTrue(p.getAnnotation() == null);
            assertTrue(p.getLevel() == 3);
            assertTrue(p.getVersion() == 1);
            assertTrue(p.getNamespaces() != null);
            assertTrue(p.getNamespaces().getLength() == 2);
            assertTrue(p.getId() == "");
            assertTrue(p.getName() == "");
            assertTrue(p.getUnits() == "");
            assertEquals(true, isnan(p.getValue()));
            assertTrue(p.getConstant() == true);
            assertEquals(false, p.isSetId());
            assertEquals(false, p.isSetName());
            assertEquals(false, p.isSetValue());
            assertEquals(false, p.isSetUnits());
            assertEquals(false, p.isSetConstant());
            p = null;
        }
Пример #4
0
        public void test_L3_Compartment_createWithNS()
        {
            XMLNamespaces xmlns = new  XMLNamespaces();

            xmlns.add("http://www.sbml.org", "testsbml");
            SBMLNamespaces sbmlns = new  SBMLNamespaces(3, 1);

            sbmlns.addNamespaces(xmlns);
            Compartment c = new  Compartment(sbmlns);

            assertTrue(c.getTypeCode() == libsbml.SBML_COMPARTMENT);
            assertTrue(c.getMetaId() == "");
            assertTrue(c.getNotes() == null);
            assertTrue(c.getAnnotation() == null);
            assertTrue(c.getLevel() == 3);
            assertTrue(c.getVersion() == 1);
            assertTrue(c.getNamespaces() != null);
            assertTrue(c.getNamespaces().getLength() == 2);
            assertTrue(c.getId() == "");
            assertTrue(c.getName() == "");
            assertTrue(c.getUnits() == "");
            assertTrue(c.getOutside() == "");
            assertEquals(true, isnan(c.getSpatialDimensionsAsDouble()));
            assertEquals(true, isnan(c.getVolume()));
            assertTrue(c.getConstant() == true);
            assertEquals(false, c.isSetId());
            assertEquals(false, c.isSetSpatialDimensions());
            assertEquals(false, c.isSetName());
            assertEquals(false, c.isSetSize());
            assertEquals(false, c.isSetVolume());
            assertEquals(false, c.isSetUnits());
            assertEquals(false, c.isSetOutside());
            assertEquals(false, c.isSetConstant());
            c = null;
        }
Пример #5
0
        public void test_L3_Unit_createWithNS()
        {
            XMLNamespaces xmlns = new  XMLNamespaces();

            xmlns.add("http://www.sbml.org", "testsbml");
            SBMLNamespaces sbmlns = new  SBMLNamespaces(3, 1);

            sbmlns.addNamespaces(xmlns);
            Unit u = new  Unit(sbmlns);

            assertTrue(u.getTypeCode() == libsbml.SBML_UNIT);
            assertTrue(u.getMetaId() == "");
            assertTrue(u.getNotes() == null);
            assertTrue(u.getAnnotation() == null);
            assertTrue(u.getLevel() == 3);
            assertTrue(u.getVersion() == 1);
            assertTrue(u.getNamespaces() != null);
            assertTrue(u.getNamespaces().getLength() == 2);
            assertTrue(u.getKind() == libsbml.UNIT_KIND_INVALID);
            assertEquals(true, isnan(u.getExponentAsDouble()));
            assertEquals(true, isnan(u.getMultiplier()));
            assertEquals(false, u.isSetKind());
            assertEquals(false, u.isSetExponent());
            assertEquals(false, u.isSetMultiplier());
            assertEquals(false, u.isSetScale());
            u = null;
        }
Пример #6
0
        public void test_L3_Event_createWithNS()
        {
            XMLNamespaces xmlns = new  XMLNamespaces();

            xmlns.add("http://www.sbml.org", "testsbml");
            SBMLNamespaces sbmlns = new  SBMLNamespaces(3, 1);

            sbmlns.addNamespaces(xmlns);
            Event e = new  Event(sbmlns);

            assertTrue(e.getTypeCode() == libsbml.SBML_EVENT);
            assertTrue(e.getMetaId() == "");
            assertTrue(e.getNotes() == null);
            assertTrue(e.getAnnotation() == null);
            assertTrue(e.getLevel() == 3);
            assertTrue(e.getVersion() == 1);
            assertTrue(e.getNamespaces() != null);
            assertTrue(e.getNamespaces().getLength() == 2);
            assertTrue(e.getId() == "");
            assertTrue(e.getName() == "");
            assertTrue(e.getUseValuesFromTriggerTime() == true);
            assertEquals(false, e.isSetId());
            assertEquals(false, e.isSetName());
            assertEquals(false, e.isSetUseValuesFromTriggerTime());
            e = null;
        }
Пример #7
0
        public void test_Constraint_createWithNS()
        {
            XMLNamespaces xmlns = new  XMLNamespaces();

            xmlns.add("http://www.sbml.org", "testsbml");
            SBMLNamespaces sbmlns = new  SBMLNamespaces(2, 2);

            sbmlns.addNamespaces(xmlns);
            Constraint object1 = new  Constraint(sbmlns);

            assertTrue(object1.getTypeCode() == libsbml.SBML_CONSTRAINT);
            assertTrue(object1.getMetaId() == "");
            assertTrue(object1.getNotes() == null);
            assertTrue(object1.getAnnotation() == null);
            assertTrue(object1.getLevel() == 2);
            assertTrue(object1.getVersion() == 2);
            assertTrue(object1.getNamespaces() != null);
            assertTrue(object1.getNamespaces().getLength() == 2);
            object1 = null;
        }
        public void test_StoichiometryMath_createWithNS()
        {
            XMLNamespaces xmlns = new  XMLNamespaces();

            xmlns.add("http://www.sbml.org", "testsbml");
            SBMLNamespaces sbmlns = new  SBMLNamespaces(2, 1);

            sbmlns.addNamespaces(xmlns);
            StoichiometryMath object1 = new  StoichiometryMath(sbmlns);

            assertTrue(object1.getTypeCode() == libsbml.SBML_STOICHIOMETRY_MATH);
            assertTrue(object1.getMetaId() == "");
            assertTrue(object1.getNotes() == null);
            assertTrue(object1.getAnnotation() == null);
            assertTrue(object1.getLevel() == 2);
            assertTrue(object1.getVersion() == 1);
            assertTrue(object1.getNamespaces() != null);
            assertTrue(object1.getNamespaces().getLength() == 2);
            object1 = null;
        }
        public void test_UnitDefinition_createWithNS()
        {
            XMLNamespaces xmlns = new  XMLNamespaces();

            xmlns.add("http://www.sbml.org", "testsbml");
            SBMLNamespaces sbmlns = new  SBMLNamespaces(2, 1);

            sbmlns.addNamespaces(xmlns);
            UnitDefinition object1 = new  UnitDefinition(sbmlns);

            assertTrue(object1.getTypeCode() == libsbml.SBML_UNIT_DEFINITION);
            assertTrue(object1.getMetaId() == "");
            assertTrue(object1.getNotes() == null);
            assertTrue(object1.getAnnotation() == null);
            assertTrue(object1.getLevel() == 2);
            assertTrue(object1.getVersion() == 1);
            assertTrue(object1.getNamespaces() != null);
            assertTrue(object1.getNamespaces().getLength() == 2);
            object1 = null;
        }
Пример #10
0
        public void test_Priority_createWithNS()
        {
            XMLNamespaces xmlns = new  XMLNamespaces();

            xmlns.add("http://www.sbml.org", "testsbml");
            SBMLNamespaces sbmlns = new  SBMLNamespaces(3, 1);

            sbmlns.addNamespaces(xmlns);
            Priority object1 = new  Priority(sbmlns);

            assertTrue(object1.getTypeCode() == libsbml.SBML_PRIORITY);
            assertTrue(object1.getMetaId() == "");
            assertTrue(object1.getNotes() == null);
            assertTrue(object1.getAnnotation() == null);
            assertTrue(object1.getLevel() == 3);
            assertTrue(object1.getVersion() == 1);
            assertTrue(object1.getNamespaces() != null);
            assertTrue(object1.getNamespaces().getLength() == 2);
            object1 = null;
        }
        public void test_EventAssignment_createWithNS()
        {
            XMLNamespaces xmlns = new  XMLNamespaces();

            xmlns.add("http://www.sbml.org", "testsbml");
            SBMLNamespaces sbmlns = new  SBMLNamespaces(2, 1);

            sbmlns.addNamespaces(xmlns);
            EventAssignment object1 = new  EventAssignment(sbmlns);

            assertTrue(object1.getTypeCode() == libsbml.SBML_EVENT_ASSIGNMENT);
            assertTrue(object1.getMetaId() == "");
            assertTrue(object1.getNotes() == null);
            assertTrue(object1.getAnnotation() == null);
            assertTrue(object1.getLevel() == 2);
            assertTrue(object1.getVersion() == 1);
            assertTrue(object1.getNamespaces() != null);
            assertTrue(object1.getNamespaces().getLength() == 2);
            object1 = null;
        }
Пример #12
0
        public void test_AlgebraicRule_createWithNS()
        {
            XMLNamespaces xmlns = new  XMLNamespaces();

            xmlns.add("http://www.sbml.org", "testsbml");
            SBMLNamespaces sbmlns = new  SBMLNamespaces(2, 3);

            sbmlns.addNamespaces(xmlns);
            Rule r = new  AlgebraicRule(sbmlns);

            assertTrue(r.getTypeCode() == libsbml.SBML_ALGEBRAIC_RULE);
            assertTrue(r.getMetaId() == "");
            assertTrue(r.getNotes() == null);
            assertTrue(r.getAnnotation() == null);
            assertTrue(r.getLevel() == 2);
            assertTrue(r.getVersion() == 3);
            assertTrue(r.getNamespaces() != null);
            assertTrue(r.getNamespaces().getLength() == 2);
            r = null;
        }
Пример #13
0
        public void test_RateRule_createWithNS()
        {
            XMLNamespaces xmlns = new  XMLNamespaces();

            xmlns.add("http://www.sbml.org", "testsbml");
            SBMLNamespaces sbmlns = new  SBMLNamespaces(2, 1);

            sbmlns.addNamespaces(xmlns);
            Rule object1 = new  RateRule(sbmlns);

            assertTrue(object1.getTypeCode() == libsbml.SBML_RATE_RULE);
            assertTrue(object1.getMetaId() == "");
            assertTrue(object1.getNotes() == null);
            assertTrue(object1.getAnnotation() == null);
            assertTrue(object1.getLevel() == 2);
            assertTrue(object1.getVersion() == 1);
            assertTrue(object1.getNamespaces() != null);
            assertTrue(object1.getNamespaces().getLength() == 2);
            object1 = null;
        }
Пример #14
0
        public void test_SpeciesType_createWithNS()
        {
            XMLNamespaces xmlns = new  XMLNamespaces();

            xmlns.add("http://www.sbml.org", "testsbml");
            SBMLNamespaces sbmlns = new  SBMLNamespaces(2, 2);

            sbmlns.addNamespaces(xmlns);
            SpeciesType object1 = new  SpeciesType(sbmlns);

            assertTrue(object1.getTypeCode() == libsbml.SBML_SPECIES_TYPE);
            assertTrue(object1.getMetaId() == "");
            assertTrue(object1.getNotes() == null);
            assertTrue(object1.getAnnotation() == null);
            assertTrue(object1.getLevel() == 2);
            assertTrue(object1.getVersion() == 2);
            assertTrue(object1.getNamespaces() != null);
            assertTrue(object1.getNamespaces().getLength() == 2);
            object1 = null;
        }
Пример #15
0
        public void test_KineticLaw_createWithNS()
        {
            XMLNamespaces xmlns = new  XMLNamespaces();

            xmlns.add("http://www.sbml.org", "testsbml");
            SBMLNamespaces sbmlns = new  SBMLNamespaces(2, 1);

            sbmlns.addNamespaces(xmlns);
            KineticLaw object1 = new  KineticLaw(sbmlns);

            assertTrue(object1.getTypeCode() == libsbml.SBML_KINETIC_LAW);
            assertTrue(object1.getMetaId() == "");
            assertTrue(object1.getNotes() == null);
            assertTrue(object1.getAnnotation() == null);
            assertTrue(object1.getLevel() == 2);
            assertTrue(object1.getVersion() == 1);
            assertTrue(object1.getNamespaces() != null);
            assertTrue(object1.getNamespaces().getLength() == 2);
            object1 = null;
        }
Пример #16
0
        public void test_Parameter_createWithNS()
        {
            XMLNamespaces xmlns = new  XMLNamespaces();

            xmlns.add("http://www.sbml.org", "testsbml");
            SBMLNamespaces sbmlns = new  SBMLNamespaces(2, 1);

            sbmlns.addNamespaces(xmlns);
            Parameter object1 = new  Parameter(sbmlns);

            assertTrue(object1.getTypeCode() == libsbml.SBML_PARAMETER);
            assertTrue(object1.getMetaId() == "");
            assertTrue(object1.getNotes() == null);
            assertTrue(object1.getAnnotation() == null);
            assertTrue(object1.getLevel() == 2);
            assertTrue(object1.getVersion() == 1);
            assertTrue(object1.getNamespaces() != null);
            assertTrue(object1.getNamespaces().getLength() == 2);
            object1 = null;
        }
Пример #17
0
        public void test_L3_Species_createWithNS()
        {
            XMLNamespaces xmlns = new  XMLNamespaces();

            xmlns.add("http://www.sbml.org", "testsbml");
            SBMLNamespaces sbmlns = new  SBMLNamespaces(3, 1);

            sbmlns.addNamespaces(xmlns);
            Species s = new  Species(sbmlns);

            assertTrue(s.getTypeCode() == libsbml.SBML_SPECIES);
            assertTrue(s.getMetaId() == "");
            assertTrue(s.getNotes() == null);
            assertTrue(s.getAnnotation() == null);
            assertTrue(s.getLevel() == 3);
            assertTrue(s.getVersion() == 1);
            assertTrue(s.getNamespaces() != null);
            assertTrue(s.getNamespaces().getLength() == 2);
            assertTrue(s.getId() == "");
            assertTrue(s.getName() == "");
            assertTrue(s.getCompartment() == "");
            assertEquals(true, isnan(s.getInitialAmount()));
            assertEquals(true, isnan(s.getInitialConcentration()));
            assertTrue(s.getSubstanceUnits() == "");
            assertTrue(s.getHasOnlySubstanceUnits() == false);
            assertTrue(s.getBoundaryCondition() == false);
            assertTrue(s.getConstant() == false);
            assertTrue(s.getConversionFactor() == "");
            assertEquals(false, s.isSetId());
            assertEquals(false, s.isSetName());
            assertEquals(false, s.isSetCompartment());
            assertEquals(false, s.isSetInitialAmount());
            assertEquals(false, s.isSetInitialConcentration());
            assertEquals(false, s.isSetSubstanceUnits());
            assertEquals(false, s.isSetHasOnlySubstanceUnits());
            assertEquals(false, s.isSetBoundaryCondition());
            assertEquals(false, s.isSetConstant());
            assertEquals(false, s.isSetConversionFactor());
            s = null;
        }
Пример #18
0
        public void test_ModifierSpeciesReference_createWithNS()
        {
            XMLNamespaces xmlns = new  XMLNamespaces();

            xmlns.add("http://www.sbml.org", "testsbml");
            SBMLNamespaces sbmlns = new  SBMLNamespaces(2, 1);

            sbmlns.addNamespaces(xmlns);
            SBase object1 = new  ModifierSpeciesReference(sbmlns);

            assertTrue(object1.getTypeCode() == libsbml.SBML_MODIFIER_SPECIES_REFERENCE);
            assertTrue(object1.getMetaId() == "");
            assertTrue(object1.getNotes() == null);
            assertTrue(object1.getAnnotation() == null);
            assertTrue(object1.getLevel() == 2);
            assertTrue(object1.getVersion() == 1);
            assertTrue(object1.getNamespaces() != null);
            XMLNamespaces n = object1.getNamespaces();

            assertTrue(n.getLength() == 2);
            object1 = null;
        }
Пример #19
0
        public void test_Compartment_createWithNS()
        {
            XMLNamespaces xmlns = new  XMLNamespaces();

            xmlns.add("http://www.sbml.org", "testsbml");
            SBMLNamespaces sbmlns = new  SBMLNamespaces(2, 1);

            sbmlns.addNamespaces(xmlns);
            Compartment c = new  Compartment(sbmlns);

            assertTrue(c.getTypeCode() == libsbml.SBML_COMPARTMENT);
            assertTrue(c.getMetaId() == "");
            assertTrue(c.getNotes() == null);
            assertTrue(c.getAnnotation() == null);
            assertTrue(c.getLevel() == 2);
            assertTrue(c.getVersion() == 1);
            assertTrue(c.getNamespaces() != null);
            assertTrue(c.getNamespaces().getLength() == 2);
            assertTrue(c.getName() == "");
            assertTrue(c.getSpatialDimensions() == 3);
            assertTrue(c.getConstant() == true);
            c = null;
        }
Пример #20
0
        public void test_L3_Model_createWithNS()
        {
            XMLNamespaces xmlns = new  XMLNamespaces();

            xmlns.add("http://www.sbml.org", "testsbml");
            SBMLNamespaces sbmlns = new  SBMLNamespaces(3, 1);

            sbmlns.addNamespaces(xmlns);
            Model m = new  Model(sbmlns);

            assertTrue(m.getTypeCode() == libsbml.SBML_MODEL);
            assertTrue(m.getMetaId() == "");
            assertTrue(m.getNotes() == null);
            assertTrue(m.getAnnotation() == null);
            assertTrue(m.getLevel() == 3);
            assertTrue(m.getVersion() == 1);
            assertTrue(m.getNamespaces() != null);
            assertTrue(m.getNamespaces().getLength() == 2);
            assertTrue(m.getId() == "");
            assertTrue(m.getName() == "");
            assertTrue(m.getSubstanceUnits() == "");
            assertTrue(m.getTimeUnits() == "");
            assertTrue(m.getVolumeUnits() == "");
            assertTrue(m.getAreaUnits() == "");
            assertTrue(m.getLengthUnits() == "");
            assertTrue(m.getConversionFactor() == "");
            assertEquals(false, m.isSetId());
            assertEquals(false, m.isSetName());
            assertEquals(false, m.isSetSubstanceUnits());
            assertEquals(false, m.isSetTimeUnits());
            assertEquals(false, m.isSetVolumeUnits());
            assertEquals(false, m.isSetAreaUnits());
            assertEquals(false, m.isSetLengthUnits());
            assertEquals(false, m.isSetConversionFactor());
            m = null;
        }