public void TestScanRegularCase()
{
InitVals();
Nucleobase[] seq1 = FrameshiftUtil.StringSeq("CGAUGCC");
// start codon found at index 2
Assert.AreEqual(2, Ribosome.Scan(seq1, start));
}
public void TestScanShortSequence()
{
InitVals();
Nucleobase[] seq1 = FrameshiftUtil.StringSeq("CG");
Ribosome.Scan(seq1, start);
}
public void TestScanNoStart()
{
InitVals();
Nucleobase[] seq1 = FrameshiftUtil.StringSeq("CGAUCUAGUCGUAGCGU");
Ribosome.Scan(seq1, start);
}
public void TestScanLast()
{
InitVals();
Nucleobase[] seq1 = FrameshiftUtil.StringSeq("CCGAUG");
Assert.AreEqual(3, Ribosome.Scan(seq1, start));
}