public GetRegionCommand(
IRegionCache regionCache,
RegionMapper regionMapper)
{
_regionCache = regionCache;
_regionMapper = regionMapper;
}
private void ExecuteTest(RegionMapper mapper, int startPosition, int?endPosition,
List <CalledAllele> expectedAlleles, bool mapAll = false)
{
var noCalls = new List <CalledAllele>();
CalledAllele noCall;
while ((noCall = mapper.GetNextEmptyCall(startPosition, endPosition)) != null)
{
noCalls.Add(noCall);
}
Assert.Equal(expectedAlleles.Count, noCalls.Count());
foreach (var noCallResult in noCalls)
{
Assert.True(expectedAlleles.Any(e => e.ReferencePosition == noCallResult.ReferencePosition &&
e.ReferenceAllele == noCallResult.ReferenceAllele &&
e.AlternateAllele == noCallResult.AlternateAllele &&
e.Chromosome == noCallResult.Chromosome &&
e.Genotype == noCallResult.Genotype));
Assert.True(noCallResult.Filters.Contains(FilterType.LowDepth));
Assert.Equal(1, noCallResult.Filters.Count);
}
}
public QueryNumbers(CfQueryNumbers source)
{
MaxResults = source.MaxResults;
FirstResult = source.FirstResult;
Region = RegionMapper.ToRegion(source.Region);
LabelName = source.LabelName;
}
public CreateRegionCommand(
IUserAuthorizationService userAuthorizationService,
CoreDbContext coreDbContext,
RegionMapper regionMapper)
{
_userAuthorizationService = userAuthorizationService;
_coreDbContext = coreDbContext;
_regionMapper = regionMapper;
}
public CfRegionQueryResult QueryRegions(CfRegionQuery queryRegions)
{
var resourceList = BaseRequest <ResourceList>(HttpMethod.Get, new RegionQuery(queryRegions),
new CallfireRestRoute <Number>(null, NumberRestRouteObjects.Regions, null));
var region = resourceList.Resource == null ? null
: resourceList.Resource.Select(r => RegionMapper.FromRegion((Region)r)).ToArray();
return(new CfRegionQueryResult(resourceList.TotalResults, region));
}
public void Map()
{
// set up test
var intervals = new List <Region>
{
new Region(4, 10),
new Region(15, 17),
new Region(25, 39),
new Region(50, 55),
new Region(60, 70),
new Region(80, 80)
};
var mapper = new RegionMapper(_chrReference, new ChrIntervalSet(intervals, "chr1"), 20);
// ------------------------------------
// coverage starts after interval start - make sure beginning positions arent skipped
// ------------------------------------
var expectedAlleles = new List <CalledAllele>();
AddReferenceNoCallsByRange(expectedAlleles, new List <Tuple <int, int> >()
{
new Tuple <int, int>(6, 10)
});
ExecuteTest(mapper, 6, 11, expectedAlleles);
// ------------------------------------
// skip second interval, fully covers third interval and partially the fourth
// ------------------------------------
expectedAlleles.Clear();
AddReferenceNoCallsByRange(expectedAlleles, new List <Tuple <int, int> >()
{
new Tuple <int, int>(25, 39),
new Tuple <int, int>(50, 52),
});
ExecuteTest(mapper, 20, 52, expectedAlleles);
// ------------------------------------
// empty region - no interval overlap
// ------------------------------------
expectedAlleles.Clear();
ExecuteTest(mapper, 56, 59, expectedAlleles);
// ------------------------------------
// all the rest
// ------------------------------------
expectedAlleles.Clear();
AddReferenceNoCallsByRange(expectedAlleles, new List <Tuple <int, int> >()
{
new Tuple <int, int>(80, 80)
});
ExecuteTest(mapper, 71, null, expectedAlleles, true);
}
public Number(CfNumber source)
{
Number1 = source.Number1;
NationalFormat = source.NationalFormat;
TollFree = source.TollFree;
Region = RegionMapper.ToRegion(source.Region);
if (source.Status.HasValue)
{
Status = EnumeratedMapper.ToSoapEnumerated <NumberStatus>(source.Status.Value.ToString());
StatusSpecified = true;
}
LeaseInfo = LeaseInfoMapper.ToLeaseInfo(source.LeaseInfo);
NumberConfiguration = NumberConfigurationMapper.ToNumberConfiguration(source.NumberConfiguration);
}
public RegionRepository()
{
regionMapper = new RegionMapper();
}
public RegionService()
{
regionRepository = new RegionRepository();
regionMapper = new RegionMapper();
}
/// <summary>
/// Creates a consolidated pricing term from a regularly formatted pricing term
/// that comes directly from the price list API. Used when you've already identified the on
/// demand pricing term and have separated out just the reserved pricing terms.
/// </summary>
/// <param name="product"></param>
/// <param name="ondemand"></param>
/// <param name="reservedterms"></param>
/// <returns></returns>
public static IEnumerable <ReservedInstancePricingTerm> Build(Product product, PricingTerm ondemand, IEnumerable <PricingTerm> reservedterms)
{
if (product == null)
{
throw new ArgumentNullException("product");
}
if (ondemand == null)
{
throw new ArgumentNullException("ondemand");
}
if (reservedterms == null)
{
throw new ArgumentNullException("reservedterms");
}
if (!reservedterms.Any())
{
throw new ArgumentException("You must supply at least 1 reserved term.");
}
double onDemandCost = -1;
// Get the on demand hourly cost
// DynamoDB has free tier price dimensions in the same on demand object, so make
// sure we pick the first that does not have free tier in the description
KeyValuePair <string, PriceDimension> dimension = ondemand.PriceDimensions.FirstOrDefault(x => !x.Value.Description.Contains(FREE_TIER, StringComparison.OrdinalIgnoreCase));
if (dimension.Value == null)
{
onDemandCost = 0;
}
else if (!Double.TryParse(dimension.Value.PricePerUnit.First().Value, out onDemandCost))
{
throw new FormatException($"Could not parse the on demand price {dimension.Value.PricePerUnit.First().Value} for sku: {product.Sku}.");
}
string platform = GetPlatform(product);
string region = RegionMapper.GetRegionFromUsageType(product.Attributes.GetValueOrDefault("usagetype"));
// Only EC2 has tenancy
if (!product.Attributes.TryGetValue("tenancy", out string tenancy))
{
tenancy = "Shared";
}
// Each pricing term will have the price dimensions for the upfront and recurring costs
foreach (PricingTerm term in reservedterms)
{
PriceDimension upfront = term.PriceDimensions
.Select(x => x.Value)
.FirstOrDefault(x => !String.IsNullOrEmpty(x.Description) && x.Description.Equals("upfront fee", StringComparison.OrdinalIgnoreCase));
PriceDimension recurring = term.PriceDimensions
.Select(x => x.Value)
.FirstOrDefault(x => !String.IsNullOrEmpty(x.Description) && !x.Description.Equals("upfront fee", StringComparison.OrdinalIgnoreCase));
double hourlyRecurring = 0;
// Only check for recurring, since some may have no upfront
if (recurring == null)
{
// This should never happen
throw new KeyNotFoundException($"The pricing term in {product.Attributes.GetValueOrDefault("servicecode")} for sku {term.Sku} and offer term code {term.OfferTermCode} did not contain a price dimension for hourly usage charges.");
}
else
{
// Parse out the rate
if (!Double.TryParse(recurring.PricePerUnit.First().Value, out hourlyRecurring))
{
throw new FormatException($"Could not parse the recurring price per unit of {recurring.PricePerUnit.First().Value} for sku {term.Sku}, offer term code {term.OfferTermCode}, in service {product.Attributes.GetValueOrDefault("servicecode")}.");
}
}
double upfrontFee = 0;
if (upfront != null)
{
// Parse out upfront fee
if (!Double.TryParse(upfront.PricePerUnit.First().Value, out upfrontFee))
{
throw new FormatException($"Could not parse the upfront cost of {upfront.PricePerUnit.First().Value} for sku {term.Sku}, offer term code {term.OfferTermCode}, in service {product.Attributes.GetValueOrDefault("servicecode")}.");
}
}
string operatingSystem = String.Empty;
if (product.Attributes.ContainsKey("operatingsystem"))
{
operatingSystem = product.Attributes.GetValueOrDefault("operatingsystem");
}
else
{
operatingSystem = platform;
}
int vCPU = 0;
if (product.Attributes.ContainsKey("vcpu"))
{
Int32.TryParse(product.Attributes.GetValueOrDefault("vcpu"), out vCPU);
}
double memory = 0;
if (product.Attributes.ContainsKey("memory"))
{
string memoryString = product.Attributes.GetValueOrDefault("memory").Replace(",", "");
Match memoryMatch = _MemoryRegex.Match(memoryString);
if (memoryMatch.Success)
{
Double.TryParse(memoryMatch.Groups[1].Value, out memory);
}
}
string usageType = product.Attributes.GetValueOrDefault("usagetype");
string instanceType = usageType;
if (product.Attributes.ContainsKey("instancetype"))
{
instanceType = product.Attributes.GetValueOrDefault("usagetype");
}
yield return(new ReservedInstancePricingTerm(
term.Sku,
term.OfferTermCode,
product.Attributes.GetValueOrDefault("servicecode"),
platform,
operatingSystem,
instanceType,
product.Attributes.GetValueOrDefault("operation"),
usageType,
tenancy,
region,
vCPU,
memory,
onDemandCost,
hourlyRecurring,
upfrontFee,
term.TermAttributes.LeaseContractLength,
term.TermAttributes.PurchaseOption,
term.TermAttributes.OfferingClass,
AWSPriceListApi.Model.Term.RESERVED
));
}
}
/// <summary>
/// Builds a row item from the current line of the csv reader, this method
/// does not change the position of the csv reader. If the row item
/// does not describe a "reservable" charge, then null is returned
/// </summary>
/// <param name="reader">The csv reader to read from</param>
/// <returns></returns>
public static CsvRowItem Build(CsvReader reader)
{
string instanceType = String.Empty;
// The field names are case sensitive
if (reader.TryGetField <string>("operation", out string operation) &&
!String.IsNullOrEmpty(operation) &&
reader.TryGetField <string>("usagetype", out string usageType) &&
allUsageTypes.IsMatch(usageType) &&
reader.TryGetField <string>("servicecode", out string serviceCode) &&
!String.IsNullOrEmpty(serviceCode) &&
(Constants.InstanceBasedReservableServices.Contains(serviceCode) ? reader.TryGetField("instance type", out instanceType) : true)
)
{
reader.TryGetField <string>("sku", out string sku);
reader.TryGetField <double>("priceperunit", out double pricePerUnit);
reader.TryGetField <string>("leasecontractlength", out string leaseContractLength);
reader.TryGetField <string>("pricedescription", out string priceDescription);
reader.TryGetField <string>("offertermcode", out string offerTermCode);
reader.TryGetField <int>("vcpu", out int vCPU);
reader.TryGetField <string>("memory", out string memoryString);
double memory = 0;
if (!String.IsNullOrEmpty(memoryString))
{
memoryString = memoryString.Replace(",", "");
Match memoryMatch = memoryRegex.Match(memoryString);
if (memoryMatch.Success)
{
Double.TryParse(memoryMatch.Groups[1].Value, out memory);
}
}
Term termType = Term.ON_DEMAND;
if (reader.TryGetField <string>("termtype", out string termString))
{
termType = EnumConverters.ConvertToTerm(termString);
}
if (String.IsNullOrEmpty(instanceType))
{
// This will probably only happen for DynamoDB
instanceType = usageType;
}
PurchaseOption purchaseOption = PurchaseOption.ON_DEMAND;
if (reader.TryGetField <string>("purchaseoption", out string PurchaseOptionString))
{
purchaseOption = EnumConverters.ConvertToPurchaseOption(PurchaseOptionString);
}
OfferingClass offeringClass = OfferingClass.STANDARD;
if (reader.TryGetField <string>("offeringclass", out string offeringClassString))
{
offeringClass = EnumConverters.ConvertToOfferingClass(offeringClassString);
}
// Only EC2 has tenancy
if (!reader.TryGetField <string>("tenancy", out string tenancy))
{
tenancy = "Shared";
}
int lease = String.IsNullOrEmpty(leaseContractLength) ? 0 : Int32.Parse(Regex.Match(leaseContractLength, "^([0-9]+)").Groups[1].Value);
string platform = GetPlatform(reader);
if (!reader.TryGetField <string>("operating system", out string operatingSystem))
{
if (!String.IsNullOrEmpty(platform))
{
operatingSystem = platform;
}
else
{
operatingSystem = serviceCode;
}
}
return(new CsvRowItem(
sku,
offerTermCode,
termType,
lease,
pricePerUnit,
vCPU,
memory,
purchaseOption,
offeringClass,
tenancy,
instanceType,
platform,
operatingSystem,
operation,
usageType,
serviceCode,
RegionMapper.GetRegionFromUsageType(usageType),
priceDescription
));
}
else
{
return(null);
}
}
// Source: https://www.czso.cz/csu/czso/pocet-obyvatel-v-obcich-k-112019
static void Main(string[] args)
{
var db = new ApplicationDbContext();
CsvParserOptions csvParserOptions = new CsvParserOptions(false, ';');
//
Console.WriteLine("-- Purging all tables --");
db.Populations.RemoveRange(db.Populations.ToArray());
db.Municipalities.RemoveRange(db.Municipalities.ToArray());
db.Districts.RemoveRange(db.Districts.ToArray());
db.Regions.RemoveRange(db.Regions.ToArray());
db.SaveChanges();
//
Console.WriteLine("-- Setting regions --");
RegionMapper csvRegionMapper = new RegionMapper();
CsvParser <Region> csvRegionParser = new CsvParser <Region>(csvParserOptions, csvRegionMapper);
var regions = csvRegionParser
.ReadFromFile(@"Files/Regions.csv", Encoding.UTF8)
.ToList();
foreach (var item in regions)
{
Console.WriteLine(item.Result.Name);
db.Regions.Add(item.Result);
}
db.SaveChanges();
//
Console.WriteLine("-- Setting districts --");
DistrictMapper csvDistrictMapper = new DistrictMapper();
CsvParser <District> csvDistrictParser = new CsvParser <District>(csvParserOptions, csvDistrictMapper);
var districts = csvDistrictParser
.ReadFromFile(@"Files/Districts.csv", Encoding.UTF8)
.ToList();
foreach (var item in districts)
{
Console.WriteLine(item.Result.Name);
db.Districts.Add(item.Result);
}
db.SaveChanges();
//
Console.WriteLine("-- Setting municipalities --");
MunicipalityMapper csvMunicipalityMapper = new MunicipalityMapper();
CsvParser <MunicipalityPopulation> csvMunicipalityParser = new CsvParser <MunicipalityPopulation>(csvParserOptions, csvMunicipalityMapper);
var municipalities2020 = csvMunicipalityParser
.ReadFromFile(@"Files/2020.csv", Encoding.UTF8)
.ToList();
foreach (var item in municipalities2020)
{
Console.WriteLine(item.Result.Name);
db.Municipalities.Add(new Municipality {
LAU1 = item.Result.LAU1,
LAU2 = item.Result.LAU2,
Name = item.Result.Name,
});
}
db.SaveChanges();
Console.WriteLine("-- Adding population data 2020 --");
foreach (var item in municipalities2020)
{
Console.WriteLine(item.Result.Name);
db.Populations.Add(new Population
{
LAU2 = item.Result.LAU2,
Year = 2020,
Total = item.Result.Total,
Men = item.Result.Men,
Women = item.Result.Women,
Age = Convert.ToDouble(item.Result.Age),
MensAge = Convert.ToDouble(item.Result.MensAge),
WomensAge = Convert.ToDouble(item.Result.WomensAge)
});
}
db.SaveChanges();
var municipalities2019 = csvMunicipalityParser
.ReadFromFile(@"Files/2019.csv", Encoding.UTF8)
.ToList();
Console.WriteLine("-- Adding population data 2019 --");
foreach (var item in municipalities2019)
{
Console.WriteLine(item.Result.Name);
db.Populations.Add(new Population
{
LAU2 = item.Result.LAU2,
Year = 2019,
Total = item.Result.Total,
Men = item.Result.Men,
Women = item.Result.Women,
Age = Convert.ToDouble(item.Result.Age),
MensAge = Convert.ToDouble(item.Result.MensAge),
WomensAge = Convert.ToDouble(item.Result.WomensAge)
});
}
db.SaveChanges();
}
public SearchAvailableNumbers(CfSearchAvailableNumbers source)
{
Region = RegionMapper.ToRegion(source.Region);
TollFree = source.TollFree;
Count = source.Count;
}
public RegionQuery(CfRegionQuery source)
{
MaxResults = source.MaxResults;
FirstResult = source.FirstResult;
Region = RegionMapper.ToRegion(source.Region);
}
public CreateNumberOrderBulkLocal(CfCreateNumberOrderBulkLocal source)
{
Count = source.Count;
Region = RegionMapper.ToRegion(source.Region);
}
public List <RegionDto> ObtenerRegiones(int?codRegion)
{
var result = _regionDao.ObtenerRegiones(codRegion);
return(RegionMapper.ToDto(result));
}