static void Main(string[] args)
{
if (args.Length == 0)
{
MainForm mf = new MainForm();
//mf.ShowDialog();
return;
}
FileInfo file;
file = new FileInfo(args[0]);
RawReaderParams readerParams = new RawReaderParams();
readerParams.LoadDefaults();
Reader reader = new Reader(readerParams);
List <MSLight> allSpectra = reader.GetSpectra(file.FullName, new List <int>(), false);
if (readerParams.ExtractMS1)
{
List <MSLight> msPrint = allSpectra.FindAll(a => a.ActivationType.Equals(""));
SpectraPrinter.PrintFile(file, msPrint, ".ms1", readerParams);
}
if (readerParams.ExtractMS2)
{
List <MSLight> msPrint = allSpectra.FindAll(a => !a.ActivationType.Equals(""));
SpectraPrinter.PrintFile(file, msPrint, ".ms2", readerParams);
}
}
private void buttonExtract_Click(object sender, EventArgs e)
{
richTextBoxMS.Clear();
RawReaderParams myParams = new RawReaderParams();
myParams.LoadDefaults();
Reader r = new Reader(myParams);
List <MSLight> theMS = r.GetSpectra(studyFile.FullName, new List <int>()
{
(int)numericUpDownSpectrumNumber.Value
}, false);
List <Ion> theIons = new List <Ion>();
for (int i = 0; i < theMS[0].MZ.Count; i++)
{
theIons.Add(new Ion(theMS[0].MZ[i], theMS[0].Intensity[i], 0, 0));
}
foreach (Ion i in theIons)
{
richTextBoxMS.AppendText(i.MZ + " " + i.Intensity + "\n");
}
}
