public TargetingTest(int expSeconds, int frameRate, int pxPERmm, string folder, string name, string fishID) : base(folder, name, fishID, expSeconds, frameRate, pxPERmm)
{
_totalFrames = ExperimentLength * FrameRate;
if (FileSaver != null)
{
_trackWriter = FileSaver.GetStreamWriter(".track");
_imageWriter = FileSaver.GetTiffWriter("_camImage.tif", true);
}
_laser = new SDLPS500Controller(Properties.Settings.Default.DAQ, Properties.Settings.Default.LaserAO);
string xchannel = Properties.Settings.Default.DAQ + "/" + Properties.Settings.Default.ScannerX;
string ychannel = Properties.Settings.Default.DAQ + "/" + Properties.Settings.Default.ScannerY;
//Load scan lookup table from file
try
{
TextReader reader = File.OpenText("main.calib");
var scanTable = BLIScanLookupTable.LoadFromFile(reader);
_scanner = new RandomAccessScanner(scanTable, xchannel, ychannel, -10, 10);
reader.Dispose();
}
catch (IOException)
{
System.Diagnostics.Debug.WriteLine("Could not find calibration data. No targeting available");
}
//This is an closed-loop experiment - try to stay fully up-to-date
SuggestedBufferSeconds = 0;
}
public Replay(Queue <string> originalTrackData, Queue <string> originalInfoData, OriginalType originalType, int originalLength, int frameRate, int pxPERmm, string folder, string name, string fishID) :
base(folder, name, fishID, originalLength, frameRate, pxPERmm)
{
if (FileSaver != null)
{
_trackWriter = FileSaver.GetStreamWriter(".track");
_imageWriter = FileSaver.GetTiffWriter("_camImage.tif", true);
_backgroundWriter = FileSaver.GetTiffWriter("_bgImage.tif", true);
//Create 10x10 mm region image
_camRegion = new Image8(Properties.Settings.Default.PixelsPermm * 10, Properties.Settings.Default.PixelsPermm * 10);
}
_laser = new SDLPS500Controller(Properties.Settings.Default.DAQ, Properties.Settings.Default.LaserAO);
string xchannel = Properties.Settings.Default.DAQ + "/" + Properties.Settings.Default.ScannerX;
string ychannel = Properties.Settings.Default.DAQ + "/" + Properties.Settings.Default.ScannerY;
//Load scan lookup table from file
try
{
TextReader reader = File.OpenText("main.calib");
var scanTable = BLIScanLookupTable.LoadFromFile(reader);
_scanner = new RandomAccessScanner(scanTable, xchannel, ychannel, -10, 10);
reader.Dispose();
}
catch (IOException)
{
System.Diagnostics.Debug.WriteLine("Could not find calibration data. No targeting available");
}
//This is a closed-loop experiment - try to stay fully up-to-date
SuggestedBufferSeconds = 0;
_originalType = originalType;
_originalTrackData = originalTrackData;
_originalInfoData = originalInfoData;
_experimentPhase = ExperimentPhase.Replay;
}
/// <summary>
/// Creates a new LaserAlignment object
/// </summary>
/// <param name="frameRate">The frameRate of the experiment</param>
public LaserAlignment(int frameRate) : base("", "", "", 0, frameRate)
{
//TODO: Here we should probably get information about actual ROI to use as well as where to store calibration data
_laser = new SDLPS500Controller(Properties.Settings.Default.DAQ, Properties.Settings.Default.LaserAO);
string xchannel = Properties.Settings.Default.DAQ + "/" + Properties.Settings.Default.ScannerX;
string ychannel = Properties.Settings.Default.DAQ + "/" + Properties.Settings.Default.ScannerY;
_scanner = new RandomAccessScanner(null, xchannel, ychannel, -10, 10);
}
protected override void Dispose(bool disposing)
{
base.Dispose(disposing);
if (_bgModel != null)
{
_bgModel.Dispose();
_bgModel = null;
}
if (_fgModel != null)
{
_fgModel.Dispose();
_fgModel = null;
}
if (_calc != null)
{
_calc.Dispose();
_calc = null;
}
if (_foreground != null)
{
_foreground.Dispose();
_foreground = null;
}
if (_markerBuffer != null)
{
Marshal.FreeHGlobal((IntPtr)_markerBuffer);
_markerBuffer = null;
}
if (_laser != null)
{
_laser.Dispose();
_laser = null;
}
if (_scanner != null)
{
_scanner.Hit(new IppiPoint_32f(0.0f, 0.0f));
_scanner.Dispose();
_scanner = null;
}
if (_strel3x3 != null)
{
_strel3x3.Dispose();
_strel3x3 = null;
}
}
public CircularGradient(int habitSeconds, int preSeconds, int gradientSeconds, int nTrials, int frameRate, int pxPERmm, string folder, string name, string fishID) :
base(folder, name, fishID, habitSeconds + (preSeconds + gradientSeconds) * nTrials, frameRate, pxPERmm)
{
if (FileSaver != null)
{
_trackWriter = FileSaver.GetStreamWriter(".track");
_imageWriter = FileSaver.GetTiffWriter("_camImage.tif", true);
_backgroundWriter = FileSaver.GetTiffWriter("_bgImage.tif", true);
//Create 10x10 mm region image
_camRegion = new Image8(Properties.Settings.Default.PixelsPermm * 10, Properties.Settings.Default.PixelsPermm * 10);
}
_laser = new SDLPS500Controller(Properties.Settings.Default.DAQ, Properties.Settings.Default.LaserAO);
string xchannel = Properties.Settings.Default.DAQ + "/" + Properties.Settings.Default.ScannerX;
string ychannel = Properties.Settings.Default.DAQ + "/" + Properties.Settings.Default.ScannerY;
//Load scan lookup table from file
try
{
TextReader reader = File.OpenText("main.calib");
var scanTable = BLIScanLookupTable.LoadFromFile(reader);
_scanner = new RandomAccessScanner(scanTable, xchannel, ychannel, -10, 10);
reader.Dispose();
}
catch (IOException)
{
System.Diagnostics.Debug.WriteLine("Could not find calibration data. No targeting available");
}
_preFrames = preSeconds * FrameRate;
_gradFrames = gradientSeconds * FrameRate;
_habitFrames = habitSeconds * FrameRate;
_nTrials = nTrials;
_currentPhaseFrame = 0;
_currentTrial = 0;//Start at 0 during habituation will be pre-incremented as we enter pre-phase and will be checked for completing at end of gradient phase
//This is a closed-loop experiment - try to stay fully up-to-date
SuggestedBufferSeconds = 0;
//Start in habituation phase
_experimentPhase = ExperimentPhase.Habituation;
}
