private void OnDoPhenology(object sender, EventArgs e)
{
if (PlantIsAlive)
{
if (thermalTime.Value() < 0)
{
throw new Exception("Negative Thermal Time, check the set up of the ThermalTime Function in" + this);
}
// Calculate progression through current phase
double propOfDayToUse = 1;
bool incrementPhase = CurrentPhase.DoTimeStep(ref propOfDayToUse);
//sorghum resets the stage variable to 0 on the day the phase changes
//it will resume again normally the day after
double resetSorghumStage = SorghumFlag != null && incrementPhase ? 0.0 : 1.0;
while (incrementPhase)
{
if ((CurrentPhase is EmergingPhase) || (CurrentPhase.End == structure?.LeafInitialisationStage))
{
Emerged = true;
}
stagesPassedToday.Add(CurrentPhase.End);
if (currentPhaseIndex + 1 >= phases.Count)
{
throw new Exception("Cannot transition to the next phase. No more phases exist");
}
currentPhaseIndex = currentPhaseIndex + 1;
PhaseChangedType PhaseChangedData = new PhaseChangedType();
PhaseChangedData.StageName = CurrentPhase.Start;
PhaseChanged?.Invoke(plant, PhaseChangedData);
if (SorghumFlag != null && CurrentPhase is EmergingPhase)
{
propOfDayToUse = 0.0;
}
incrementPhase = CurrentPhase.DoTimeStep(ref propOfDayToUse);
}
AccumulatedTT += thermalTime.Value();
if (Emerged)
{
AccumulatedEmergedTT += thermalTime.Value();
}
Stage = (currentPhaseIndex + 1) + resetSorghumStage * CurrentPhase.FractionComplete;
if (plant != null)
{
if (plant.IsAlive && PostPhenology != null)
{
PostPhenology.Invoke(this, new EventArgs());
}
}
}
}
private void OnDoPhenology(object sender, EventArgs e)
{
if (PlantIsAlive)
{
// If this is the first time through here then setup some variables.
if (Phases == null || Phases.Count == 0)
{
OnSimulationCommencing(null, null);
}
CurrentlyOnFirstDayOfPhase = "";
if (JustInitialised)
{
CurrentlyOnFirstDayOfPhase = Phases[0].Start;
JustInitialised = false;
}
double FractionOfDayLeftOver = CurrentPhase.DoTimeStep(1.0);
if (FractionOfDayLeftOver > 0)
{
// Transition to the next phase.
if (CurrentPhaseIndex + 1 >= Phases.Count)
{
throw new Exception("Cannot transition to the next phase. No more phases exist");
}
if (CurrentPhase is EmergingPhase)
{
Emerged = true;
}
CurrentPhase = Phases[CurrentPhaseIndex + 1];
if (GrowthStage != null)
{
GrowthStage.Invoke();
}
// Tell the new phase to use the fraction of day left.
FractionOfDayLeftOver = CurrentPhase.AddTT(FractionOfDayLeftOver);
Stage = CurrentPhaseIndex + 1;
}
else
{
Stage = (CurrentPhaseIndex + 1) + CurrentPhase.FractionComplete;
}
_AccumulatedTT += CurrentPhase.TTForToday;
if (Emerged && PostPhenology != null)
{
PostPhenology.Invoke(this, new EventArgs());
}
Util.Debug("Phenology.CurrentPhaseName=%s", CurrentPhase.Name.ToLower());
Util.Debug("Phenology.CurrentStage=%f", Stage);
}
}
private void OnDoPhenology(object sender, EventArgs e)
{
if (PlantIsAlive)
{
if (thermalTime.Value() < 0)
{
throw new Exception("Negative Thermal Time, check the set up of the ThermalTime Function in" + this);
}
// Calculate progression through current phase
double propOfDayToUse = 1;
bool incrementPhase = CurrentPhase.DoTimeStep(ref propOfDayToUse);
AccumulateTT(CurrentPhase.TTForTimeStep);
while (incrementPhase)
{
if ((CurrentPhase is EmergingPhase) || (CurrentPhase is BuddingPhase))
{
Emerged = true;
}
stagesPassedToday.Add(CurrentPhase.End);
if (currentPhaseIndex + 1 >= phases.Count)
{
throw new Exception("Cannot transition to the next phase. No more phases exist");
}
currentPhaseIndex = currentPhaseIndex + 1;
PhaseChangedType PhaseChangedData = new PhaseChangedType();
PhaseChangedData.StageName = CurrentPhase.Start;
PhaseChanged?.Invoke(plant, PhaseChangedData);
incrementPhase = CurrentPhase.DoTimeStep(ref propOfDayToUse);
AccumulateTT(CurrentPhase.TTForTimeStep);
}
Stage = (currentPhaseIndex + 1) + CurrentPhase.FractionComplete;
if (plant != null)
{
if (plant.IsAlive && PostPhenology != null)
{
PostPhenology.Invoke(this, new EventArgs());
}
}
}
}
private void OnDoPhenology(object sender, EventArgs e)
{
if (PlantIsAlive)
{
if (ThermalTime.Value() < 0)
{
throw new Exception("Negative Thermal Time, check the set up of the ThermalTime Function in" + this);
}
// If this is the first time through here then setup some variables.
if (Phases == null || Phases.Count == 0)
{
OnSimulationCommencing(null, null);
}
if (CurrentlyOnFirstDayOfPhase[0] == "")
{
if (JustInitialised)
{
CurrentlyOnFirstDayOfPhase[0] = Phases[0].Start;
JustInitialised = false;
}
}
double FractionOfDayLeftOver = CurrentPhase.DoTimeStep(1.0);
if (FractionOfDayLeftOver > 0)
{
while (FractionOfDayLeftOver > 0) // Transition to the next phase.
{
if (CurrentPhaseIndex + 1 >= Phases.Count)
{
throw new Exception("Cannot transition to the next phase. No more phases exist");
}
if (Stage >= 1)
{
Germinated = true;
}
if ((CurrentPhase is EmergingPhase) || (CurrentPhase is BuddingPhase))
{
Plant.SendEmergingEvent();
Emerged = true;
}
CurrentPhase = Phases[CurrentPhaseIndex + 1];
if (GrowthStage != null)
{
GrowthStage.Invoke();
}
// run the next phase with the left over time step from the phase we have just completed
FractionOfDayLeftOver = CurrentPhase.DoTimeStep(FractionOfDayLeftOver);
Stage = (CurrentPhaseIndex + 1) + CurrentPhase.FractionComplete - PhaseIndexOffset;
}
}
else
{
Stage = (CurrentPhaseIndex + 1) + CurrentPhase.FractionComplete - PhaseIndexOffset;
}
AccumulatedTT += CurrentPhase.TTForToday;
if (Emerged)
{
AccumulatedEmergedTT += CurrentPhase.TTForToday;
}
if (Plant != null)
{
if (Plant.IsAlive && PostPhenology != null)
{
PostPhenology.Invoke(this, new EventArgs());
}
}
Util.Debug("Phenology.CurrentPhaseName=%s", CurrentPhase.Name.ToLower());
Util.Debug("Phenology.CurrentStage=%f", Stage);
}
}
private void OnDoPhenology(object sender, EventArgs e)
{
if (PlantIsAlive)
{
if (ThermalTime.Value() < 0)
{
throw new Exception("Negative Thermal Time, check the set up of the ThermalTime Function in" + this);
}
// If this is the first time through here then setup some variables.
if (CurrentlyOnFirstDayOfPhase[0] == "")
{
if (JustInitialised)
{
CurrentlyOnFirstDayOfPhase[0] = phases[0].Start;
JustInitialised = false;
}
}
// Calculate how much of todays progress will not be consumed by current phase
double FractionOfDayLeftOver = CurrentPhase.DoTimeStep(1.0);
// If it is more than zero then we need to transition phases
if (FractionOfDayLeftOver > 0)
{
while (FractionOfDayLeftOver > 0)// It is possible more than one phase will be passed in a day so keep doing this until complete.
{
if (CurrentPhaseIndex + 1 >= phases.Count)
{
throw new Exception("Cannot transition to the next phase. No more phases exist");
}
if (Stage >= 1)
{
Germinated = true;
}
CurrentPhase = phases[CurrentPhaseIndex + 1];
// run the next phase with the left over time step from the phase we have just completed
FractionOfDayLeftOver = CurrentPhase.DoTimeStep(FractionOfDayLeftOver);
Stage = (CurrentPhaseIndex + 1) + CurrentPhase.FractionComplete;
}
}
else
{
Stage = (CurrentPhaseIndex + 1) + CurrentPhase.FractionComplete;
}
AccumulatedTT += CurrentPhase.TTForToday;
if (Emerged)
{
AccumulatedEmergedTT += CurrentPhase.TTForToday;
}
if (Plant != null)
{
if (Plant.IsAlive && PostPhenology != null)
{
PostPhenology.Invoke(this, new EventArgs());
}
}
}
}
private void OnDoPhenology(object sender, EventArgs e)
{
if (PlantIsAlive)
{
if (thermalTime.Value() < 0)
{
throw new Exception("Negative Thermal Time, check the set up of the ThermalTime Function in" + this);
}
// Calculate progression through current phase
double propOfDayToUse = 1;
bool incrementPhase = CurrentPhase.DoTimeStep(ref propOfDayToUse);
//sorghum resets the stage variable to 0 on the day the phase changes
//it will resume again normally the day after
double resetSorghumStage = SorghumFlag != null && incrementPhase ? 0.0 : 1.0;
while (incrementPhase)
{
if ((CurrentPhase is EmergingPhase) || (CurrentPhase.End == structure?.LeafInitialisationStage) || (CurrentPhase is DAWSPhase))
{
Emerged = true;
}
stagesPassedToday.Add(CurrentPhase.End);
if (currentPhaseIndex + 1 >= phases.Count)
{
throw new Exception("Cannot transition to the next phase. No more phases exist");
}
currentPhaseIndex = currentPhaseIndex + 1;
PhaseChangedType PhaseChangedData = new PhaseChangedType();
PhaseChangedData.StageName = CurrentPhase.Start;
PhaseChanged?.Invoke(plant, PhaseChangedData);
if (SorghumFlag != null && CurrentPhase is EmergingPhase)
{
// void accumulate(...)
double dltPhase = 1.0 + Stage % 1.0;
double newStage = Math.Floor(Stage) + dltPhase;
double dltStage = newStage - Stage;
double pIndex = Stage;
double dltIndex = dltStage;
double indexDevel = pIndex - Math.Floor(pIndex) + dltIndex;
double portionInOld = 1 - APSIM.Shared.Utilities.MathUtilities.Divide(indexDevel - 1, dltIndex, 0);
propOfDayToUse = 1 - portionInOld;
}
incrementPhase = CurrentPhase.DoTimeStep(ref propOfDayToUse);
if (SorghumFlag != null && CurrentStageName == "Emergence")
{
AccumulatedEmergedTT -= (1 - propOfDayToUse) * thermalTime.Value();
}
}
AccumulatedTT += thermalTime.Value();
if (Emerged)
{
AccumulatedEmergedTT += thermalTime.Value();
}
Stage = (currentPhaseIndex + 1) + resetSorghumStage * CurrentPhase.FractionComplete;
if (plant != null && plant.IsAlive && PostPhenology != null)
{
PostPhenology.Invoke(this, new EventArgs());
}
}
}
