public void AddPosition_NewPositionInRange_EmptyBufferReturned()
{
var position1 = GetMockedIPositionOnChr1(99, 99);
_geneIntervalForestMock.Setup(x => x.OverlapsAny(0, 100, 100)).Returns(true);
_codonInfoProviderMock.Setup(x => x.GetLongestFunctionBlockDistance(position1)).Returns(101);
var positionBuffer = new PositionBuffer(_codonInfoProviderMock.Object, _geneIntervalForestMock.Object);
positionBuffer.AddPosition(position1);
var position2 = GetMockedIPositionOnChr1(100, 100, "C");
var bufferedPositions = positionBuffer.AddPosition(position2);
Assert.IsType <BufferedPositions>(bufferedPositions);
Assert.Empty(bufferedPositions.SimplePositions);
Assert.Empty(bufferedPositions.Recomposable);
}
public void AddPosition_ChromosomeUpdated_WhenFirstPositionAdded()
{
var positionBuffer = new PositionBuffer(_codonInfoProviderMock.Object, _geneIntervalForestMock.Object);
var position = GetMockedIPositionOnChr1(99, 99);
positionBuffer.AddPosition(position);
Assert.Equal(new Chromosome("chr1", "1", 0), positionBuffer.CurrentChromosome);
}
public void PositionWithinRange_Position_OutGeneRegion_ReturnFalse()
{
var position1 = GetMockedIPositionOnChr1(99, 99);
_geneIntervalForestMock.Setup(x => x.OverlapsAny(0, 100, 100)).Returns(false);
_codonInfoProviderMock.Setup(x => x.GetLongestFunctionBlockDistance(position1)).Returns(101);
var positionBuffer = new PositionBuffer(_codonInfoProviderMock.Object, _geneIntervalForestMock.Object);
positionBuffer.AddPosition(position1);
var position2 = GetMockedIPositionOnChr1(100, 100, "C");
Assert.False(positionBuffer.PositionWithinRange(position2));
}
public void Purge_BufferedPositionsPurged()
{
var position1 = GetMockedIPositionOnChr1(99, 99);
var position2 = GetMockedIPositionOnChr1(100, 100, ".");
_geneIntervalForestMock.Setup(x => x.OverlapsAny(0, 100, 100)).Returns(true);
_codonInfoProviderMock.Setup(x => x.GetLongestFunctionBlockDistance(position1)).Returns(101);
_codonInfoProviderMock.Setup(x => x.GetLongestFunctionBlockDistance(position2)).Returns(101);
var positionBuffer = new PositionBuffer(_codonInfoProviderMock.Object, _geneIntervalForestMock.Object);
positionBuffer.AddPosition(position1);
positionBuffer.AddPosition(position2);
var bufferedPositions = positionBuffer.Purge();
Assert.IsType <BufferedPositions>(bufferedPositions);
Assert.Equal(2, bufferedPositions.SimplePositions.Count);
Assert.Equal(2, bufferedPositions.Recomposable.Count);
Assert.True(bufferedPositions.SimplePositions[0].Equals(position1));
Assert.True(bufferedPositions.SimplePositions[1].Equals(position2));
Assert.True(bufferedPositions.Recomposable[0]);
Assert.False(bufferedPositions.Recomposable[1]);
}
public void PositionWithinRange_Position_InRange_ReturnTrue()
{
var position1 = GetMockedIPositionOnChr1(99, 99);
_geneIntervalForestMock.Setup(x => x.OverlapsAny(0, 100, 100)).Returns(true);
_codonInfoProviderMock.Setup(x => x.GetFunctionBlockRanges(position1)).Returns(101);
var positionBuffer = new PositionBuffer(_codonInfoProviderMock.Object, _geneIntervalForestMock.Object);
positionBuffer.AddPosition(position1);
var position2 = GetMockedIPositionOnChr1(100, 100, "C");
Assert.True(positionBuffer.PositionWithinRange(position2));
}
