internal static ArrayList run(IList para)
{
bool reverse = false;
modshogun.init_shogun_with_defaults();
int degree = (int)((int?)para[0]);
string[] fm_train_dna = Load.load_dna("../data/fm_train_dna.dat");
string[] fm_test_dna = Load.load_dna("../data/fm_test_dna.dat");
StringCharFeatures feats_train = new StringCharFeatures(fm_train_dna, DNA);
StringCharFeatures feats_test = new StringCharFeatures(fm_test_dna, DNA);
PolyMatchStringKernel kernel = new PolyMatchStringKernel(feats_train, feats_train, degree, true);
DoubleMatrix km_train = kernel.get_kernel_matrix();
kernel.init(feats_train, feats_test);
DoubleMatrix km_test =kernel.get_kernel_matrix();
ArrayList result = new ArrayList();
result.Add(km_train);
result.Add(km_test);
result.Add(kernel);
modshogun.exit_shogun();
return result;
}
public static void Main()
{
modshogun.init_shogun_with_defaults();
bool reverse = false;
int degree = 3;
String[] fm_train_dna = Load.load_dna("../data/fm_train_dna.dat");
String[] fm_test_dna = Load.load_dna("../data/fm_test_dna.dat");
StringCharFeatures feats_train = new StringCharFeatures(fm_train_dna, EAlphabet.DNA);
StringCharFeatures feats_test = new StringCharFeatures(fm_test_dna, EAlphabet.DNA);
PolyMatchStringKernel kernel = new PolyMatchStringKernel(feats_train, feats_train, degree, true);
double[,] km_train = kernel.get_kernel_matrix();
kernel.init(feats_train, feats_test);
double[,] km_test=kernel.get_kernel_matrix();
}
public static void Main()
{
modshogun.init_shogun_with_defaults();
bool reverse = false;
int degree = 3;
String[] fm_train_dna = Load.load_dna("../data/fm_train_dna.dat");
String[] fm_test_dna = Load.load_dna("../data/fm_test_dna.dat");
StringCharFeatures feats_train = new StringCharFeatures(fm_train_dna, EAlphabet.DNA);
StringCharFeatures feats_test = new StringCharFeatures(fm_test_dna, EAlphabet.DNA);
PolyMatchStringKernel kernel = new PolyMatchStringKernel(feats_train, feats_train, degree, true);
double[,] km_train = kernel.get_kernel_matrix();
kernel.init(feats_train, feats_test);
double[,] km_test = kernel.get_kernel_matrix();
}
internal static HandleRef getCPtr(PolyMatchStringKernel obj) {
return (obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr;
}
internal static HandleRef getCPtr(PolyMatchStringKernel obj)
{
return((obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr);
}