public void ApplyThrust()
{
var thrustVector = middleMarker.transform.forward.normalized;
var acc = thrustVector * Plotting.Thrust;
Velocity += acc;
Plotting = Plotting.Empty;
}
private void ProcessFile(IOptions options, string rawFilePath, Action <string> statusUpdate = null)
{
var outputFilePath = GetOutputFileForDataset(options, rawFilePath);
if (!options.OverwriteOutput && File.Exists(outputFilePath) && CompoundData.CheckSettings(outputFilePath, options))
{
Console.WriteLine("Skipping file \"{0}\"; existing output was created with matching settings", rawFilePath);
return;
}
Console.WriteLine("Processing file \"{0}\"", rawFilePath);
statusUpdate?.Invoke($"Processing file \"{rawFilePath}\"");
var instanceCreator = ReaderLoader.GetReaderForFile(rawFilePath);
var rawReader = instanceCreator.CreateSpectraReader(rawFilePath);
var methodReader = instanceCreator.CreateMethodReader(rawFilePath, options.MethodFilePath);
var compounds = methodReader.ReadMethodData(options);
var results = rawReader.ReadSpectraData(compounds);
if (results == null)
{
return;
}
//Console.WriteLine("File \"{0}\": RawResults: {1}", rawFilePath, results.Count);
//var combined = rawReader.AggregateResults(results, options.DefaultThreshold, CompoundThresholdsLookup);
//Console.WriteLine("File \"{0}\": CombinedResults: {1}", rawFilePath, combined.Count);
CompoundData.WriteCombinedResultsToFile(outputFilePath, results, options);
Plotting.PlotResults(results, Path.GetFileNameWithoutExtension(rawFilePath), Path.ChangeExtension(outputFilePath, null) + "_summary", options.ImageSaveFormat);
var pdfPath = Path.ChangeExtension(outputFilePath, "pdf");
var pdfWriter = new PdfWriter(Path.GetFileNameWithoutExtension(rawFilePath), rawFilePath, pdfPath);
pdfWriter.WritePdf(results, options);
/*//////
* var imagesDir = Path.ChangeExtension(outputFilePath, null) + "_images";
* if (!Directory.Exists(imagesDir))
* {
* try
* {
* Directory.CreateDirectory(imagesDir);
* }
* catch { }
* }
*
* if (Directory.Exists(imagesDir))
* {
* foreach (var compound in results)
* {
* // replace invalid characters with underscores
* var name = Path.GetInvalidFileNameChars().Aggregate(compound.CompoundName, (current, c) => current.Replace(c.ToString(), "_"));
* var namePrefix = (compound.PassesAllThresholds
* ? "P"
* : GetCompoundDataPrefix(compound)) + "_";
* var pathBase = Path.Combine(imagesDir, namePrefix + name);
* Plotting.PlotCompound(compound, pathBase + ".png", Plotting.ExportFormat.PDF);
*
* foreach (var transition in compound.Transitions)
* {
* var path = $"{pathBase}_{transition.ProductMz:F2}.png";
* Plotting.PlotTransition(transition, path, Plotting.ExportFormat.PDF);
* }
* }
* }
* /**/
Console.WriteLine("Finished Processing file \"{0}\"", rawFilePath);
statusUpdate?.Invoke($"Finished Processing file \"{rawFilePath}\"");
}
public void RefreshGraphics()
{
ArrayList array = null;
bool includeDuplicates = Visualization.IncludeDuplicates == CheckState.Checked ? true : false;
EnableNDisable();
switch (PlotType)
{
case PlotTypes.Mass:
array = Exoplanets.PlanetsWithMass(Exoplanets.ExoplanetsArray, false, includeDuplicates);
Plotting.VisualizeLinearDiagrams(PlotSurface2D, array, PlotType);
break;
case PlotTypes.Radius:
array = Exoplanets.PlanetsWithRadius(Exoplanets.ExoplanetsArray, false, includeDuplicates);
Plotting.VisualizeLinearDiagrams(PlotSurface2D, array, PlotType);
break;
case PlotTypes.OrbitalPeriod:
array = Exoplanets.PlanetsWithOrbitalPeriods(Exoplanets.ExoplanetsArray, false, includeDuplicates);
Plotting.VisualizeLinearDiagrams(PlotSurface2D, array, PlotType);
break;
case PlotTypes.SemiMajorAxis:
array = Exoplanets.PlanetsWithSemiMajorAxis(Exoplanets.ExoplanetsArray, false, includeDuplicates);
Plotting.VisualizeLinearDiagrams(PlotSurface2D, array, PlotType);
break;
case PlotTypes.Eccentricity:
array = Exoplanets.PlanetsWithEccentricity(Exoplanets.ExoplanetsArray, false, includeDuplicates);
Plotting.VisualizeLinearDiagrams(PlotSurface2D, array, PlotType);
break;
case PlotTypes.AngularDistance:
array = Exoplanets.PlanetsWithAngularDistance(Exoplanets.ExoplanetsArray, includeDuplicates);
Plotting.VisualizeLinearDiagrams(PlotSurface2D, array, PlotType);
break;
case PlotTypes.Inclination:
array = Exoplanets.PlanetsWithInclination(Exoplanets.ExoplanetsArray, false, includeDuplicates);
Plotting.VisualizeLinearDiagrams(PlotSurface2D, array, PlotType);
break;
case PlotTypes.TemperatureCalculated:
array = Exoplanets.PlanetsWithTemperatureCalculated(Exoplanets.ExoplanetsArray, includeDuplicates);
Plotting.VisualizeLinearDiagrams(PlotSurface2D, array, PlotType);
break;
case PlotTypes.Omega:
array = Exoplanets.PlanetsWithOmega(Exoplanets.ExoplanetsArray, false, includeDuplicates);
Plotting.VisualizeLinearDiagrams(PlotSurface2D, array, PlotType);
break;
case PlotTypes.VelocitySemiamplitude:
array = Exoplanets.PlanetsWithVelocitySemiamplitude(Exoplanets.ExoplanetsArray, false, true, includeDuplicates);
Plotting.VisualizeLinearDiagrams(PlotSurface2D, array, PlotType);
break;
case PlotTypes.MassAndRadius:
if ((array = Exoplanets.PlanetsWithMass(Exoplanets.ExoplanetsArray, false, true)) != null)
{
if ((array = Exoplanets.PlanetsWithRadius(array, false, true)) != null)
{
Plotting.VisualizePointDiagrams(PlotSurface2D, array, PlotTypes.MassAndRadius);
}
}
break;
case PlotTypes.MassAndOrbitalPeriod:
if ((array = Exoplanets.PlanetsWithMass(Exoplanets.ExoplanetsArray, false, true)) != null)
{
if ((array = Exoplanets.PlanetsWithOrbitalPeriods(array, false, true)) != null)
{
Plotting.VisualizePointDiagrams(PlotSurface2D, array, PlotTypes.MassAndOrbitalPeriod);
}
}
break;
case PlotTypes.MassAndSemiMajorAxis:
if ((array = Exoplanets.PlanetsWithMass(Exoplanets.ExoplanetsArray, false, true)) != null)
{
if ((array = Exoplanets.PlanetsWithSemiMajorAxis(array, false, true)) != null)
{
Plotting.VisualizePointDiagrams(PlotSurface2D, array, PlotTypes.MassAndSemiMajorAxis);
}
}
break;
case PlotTypes.MassAndEccentricity:
if ((array = Exoplanets.PlanetsWithMass(Exoplanets.ExoplanetsArray, false, true)) != null)
{
if ((array = Exoplanets.PlanetsWithEccentricity(array, false, true)) != null)
{
Plotting.VisualizePointDiagrams(PlotSurface2D, array, PlotTypes.MassAndEccentricity);
}
}
break;
case PlotTypes.MassAndAngularDistance:
if ((array = Exoplanets.PlanetsWithMass(Exoplanets.ExoplanetsArray, false, true)) != null)
{
if ((array = Exoplanets.PlanetsWithAngularDistance(array, true)) != null)
{
Plotting.VisualizePointDiagrams(PlotSurface2D, array, PlotTypes.MassAndAngularDistance);
}
}
break;
case PlotTypes.MassAndOmega:
if ((array = Exoplanets.PlanetsWithMass(Exoplanets.ExoplanetsArray, false, true)) != null)
{
if ((array = Exoplanets.PlanetsWithOmega(array, false, true)) != null)
{
Plotting.VisualizePointDiagrams(PlotSurface2D, array, PlotTypes.MassAndOmega);
}
}
break;
case PlotTypes.MassAndInclination:
if ((array = Exoplanets.PlanetsWithMass(Exoplanets.ExoplanetsArray, false, true)) != null)
{
if ((array = Exoplanets.PlanetsWithInclination(array, false, true)) != null)
{
Plotting.VisualizePointDiagrams(PlotSurface2D, array, PlotTypes.MassAndInclination);
}
}
break;
case PlotTypes.MassAndVelocitySemiamplitude:
if ((array = Exoplanets.PlanetsWithMass(Exoplanets.ExoplanetsArray, false, true)) != null)
{
if ((array = Exoplanets.PlanetsWithVelocitySemiamplitude(array, false, true, true)) != null)
{
Plotting.VisualizePointDiagrams(PlotSurface2D, array, PlotTypes.MassAndVelocitySemiamplitude);
}
}
break;
case PlotTypes.RadiusAndMass:
if ((array = Exoplanets.PlanetsWithRadius(Exoplanets.ExoplanetsArray, false, true)) != null)
{
if ((array = Exoplanets.PlanetsWithMass(array, false, true)) != null)
{
Plotting.VisualizePointDiagrams(PlotSurface2D, array, PlotTypes.RadiusAndMass);
}
}
break;
case PlotTypes.RadiusAndOrbitalPeriod:
if ((array = Exoplanets.PlanetsWithRadius(Exoplanets.ExoplanetsArray, false, true)) != null)
{
if ((array = Exoplanets.PlanetsWithOrbitalPeriods(array, false, true)) != null)
{
Plotting.VisualizePointDiagrams(PlotSurface2D, array, PlotTypes.RadiusAndOrbitalPeriod);
}
}
break;
case PlotTypes.RadiusAndSemiMajorAxis:
if ((array = Exoplanets.PlanetsWithRadius(Exoplanets.ExoplanetsArray, false, true)) != null)
{
if ((array = Exoplanets.PlanetsWithSemiMajorAxis(array, false, true)) != null)
{
Plotting.VisualizePointDiagrams(PlotSurface2D, array, PlotTypes.RadiusAndSemiMajorAxis);
}
}
break;
case PlotTypes.RadiusAndEccentricity:
if ((array = Exoplanets.PlanetsWithRadius(Exoplanets.ExoplanetsArray, false, true)) != null)
{
if ((array = Exoplanets.PlanetsWithEccentricity(array, false, true)) != null)
{
Plotting.VisualizePointDiagrams(PlotSurface2D, array, PlotTypes.RadiusAndEccentricity);
}
}
break;
case PlotTypes.RadiusAndAngularDistance:
if ((array = Exoplanets.PlanetsWithRadius(Exoplanets.ExoplanetsArray, false, true)) != null)
{
if ((array = Exoplanets.PlanetsWithAngularDistance(array, true)) != null)
{
Plotting.VisualizePointDiagrams(PlotSurface2D, array, PlotTypes.RadiusAndAngularDistance);
}
}
break;
case PlotTypes.RadiusAndOmega:
if ((array = Exoplanets.PlanetsWithRadius(Exoplanets.ExoplanetsArray, false, true)) != null)
{
if ((array = Exoplanets.PlanetsWithOmega(array, false, true)) != null)
{
Plotting.VisualizePointDiagrams(PlotSurface2D, array, PlotTypes.RadiusAndOmega);
}
}
break;
case PlotTypes.RadiusAndInclination:
if ((array = Exoplanets.PlanetsWithRadius(Exoplanets.ExoplanetsArray, false, true)) != null)
{
if ((array = Exoplanets.PlanetsWithInclination(array, false, true)) != null)
{
Plotting.VisualizePointDiagrams(PlotSurface2D, array, PlotTypes.RadiusAndInclination);
}
}
break;
case PlotTypes.RadiusAndVelocitySemiamplitude:
if ((array = Exoplanets.PlanetsWithRadius(Exoplanets.ExoplanetsArray, false, true)) != null)
{
if ((array = Exoplanets.PlanetsWithVelocitySemiamplitude(array, false, true, true)) != null)
{
Plotting.VisualizePointDiagrams(PlotSurface2D, array, PlotTypes.RadiusAndVelocitySemiamplitude);
}
}
break;
case PlotTypes.Stars:
Plotting.VisualizeStars(PlotSurface2D, Exoplanets.ExoplanetsArray);
break;
}
PlotSurface2D.RightMenu = NPlot.Windows.PlotSurface2D.DefaultContextMenu;
}
