public void Test()
{
ParserFormatList lstFormat = new ParserFormatList();
lstFormat.ReadFromFile(@"../../../data/MiscOptions.xml", AccessNumberParserFactory.SECTION_NAME);
List<IAccessNumberParser> acParser = AccessNumberParserFactory.GetParsers(lstFormat);
Assert.AreEqual(5, acParser.Count);
}
public void Test()
{
ParserFormatList lstFormat = new ParserFormatList();
lstFormat.ReadFromFile(TestContext.CurrentContext.TestDirectory + "/../../../data/MiscOptions.xml", AccessNumberParserFactory.SECTION_NAME);
List <IAccessNumberParser> acParser = AccessNumberParserFactory.GetParsers(lstFormat);
Assert.AreEqual(5, acParser.Count);
}
private static void InitParsers()
{
ParserFormatList lstFormat = ParserFormatList.ReadFromOptionFile(SECTION_NAME);
parsers = GetParsers(lstFormat);
autoParser = parsers.Find(m => m.FormatName.Equals(AutoAccessNumberParser.FORMAT_NAME));
if (autoParser == null)
{
autoParser = DefaultAccessNumberParser.GetInstance();
}
}
public void TestReadFromFile()
{
Console.WriteLine(Application.ExecutablePath);
var list = new ParserFormatList();
list.ReadFromFile(optionFile, "DatabaseParseDefinitions");
Assert.AreEqual(4, list.Count);
Assert.AreEqual("IPI", list[0].FormatName);
Assert.AreEqual("33001", list[0].FormatId);
Assert.AreEqual("IPI:IPI00022229.1|SWISS-PROT:P04114|...", list[0].Sample);
Assert.AreEqual(1, list[0].Count);
Assert.AreEqual("accessNumber", list[0][0].ItemName);
Assert.AreEqual(@"(IPI\d+)", list[0][0].RegularExpression);
Assert.AreEqual(1.0, list[0][0].Slope);
Assert.AreEqual(0.0, list[0][0].Offset);
}
public static List<IAccessNumberParser> GetParsers(ParserFormatList lstFormat)
{
List<IAccessNumberParser> result = new List<IAccessNumberParser>();
if (null != lstFormat && lstFormat.Count > 0)
{
List<IAccessNumberParser> parsers = lstFormat.ConvertAll(m => (IAccessNumberParser)new AccessNumberParser(m));
parsers.ForEach(p => result.Add(new NoExceptionAccessNumberParser(p)));
result.Add(new AutoAccessNumberParser(parsers));
}
else
{
result.Add(DefaultAccessNumberParser.GetInstance());
}
return result;
}
public static List <IAccessNumberParser> GetParsers(ParserFormatList lstFormat)
{
List <IAccessNumberParser> result = new List <IAccessNumberParser>();
if (null != lstFormat && lstFormat.Count > 0)
{
List <IAccessNumberParser> parsers = lstFormat.ConvertAll(m => (IAccessNumberParser) new AccessNumberParser(m));
parsers.ForEach(p => result.Add(new NoExceptionAccessNumberParser(p)));
result.Add(new AutoAccessNumberParser(parsers));
}
else
{
result.Add(DefaultAccessNumberParser.GetInstance());
}
return(result);
}
public static List <ITitleParser> GetTitleParsers()
{
List <ITitleParser> result = new List <ITitleParser>();
ParserFormatList lstFormat = ParserFormatList.ReadFromOptionFile("TITLElineParseDefinitions");
if (null != lstFormat)
{
List <ITitleParser> parsers = lstFormat.ConvertAll(format => (ITitleParser)(new TitleParser(format)));
DefaultTitleParser auto = new DefaultTitleParser(parsers);
result = new List <ITitleParser>(parsers);
result.Add(auto);
}
else
{
result.Add(new DefaultTitleParser());
}
return(result);
}
