public static Tuple <long, long> Fill <TPayload>(Sorting sorting, Overlapping overlapping, TPayload filler, MappedInterval <TPayload>[] output)
{
var count = output.Length;
var start = 0L;
var duration = 10L;
var step = overlapping == Overlapping.Yes ? duration >> 1 : duration << 1;
var min = long.MaxValue;
var max = long.MinValue;
switch (sorting)
{
case Sorting.Ascending:
case Sorting.Descending:
{
var from = sorting == Sorting.Ascending ? 0 : count - 1;
var to = sorting == Sorting.Ascending ? count : 0;
var delta = sorting == Sorting.Ascending ? 1 : -1;
while (from != to)
{
min = Math.Min(min, start);
max = Math.Max(max, start + duration);
output[from] = new MappedInterval <TPayload>(start, start + duration, filler);
start += step;
from += delta;
}
break;
}
case Sorting.Random:
{
var durationFrom = (int)(duration - duration * 0.2);
var durationTo = (int)(duration + duration * 0.2);
var r = new Random(0xDEAD);
for (var i = 0; i < count; ++i)
{
var s = r.Next(0, int.MaxValue);
var d = r.Next(durationFrom, durationTo);
min = Math.Min(min, s);
max = Math.Max(max, s + d);
output[i] = new MappedInterval <TPayload>(s, s + d, filler);
}
break;
}
}
return(Tuple.Create(min, max));
}
/// <summary>
/// Cut the last nucleotide of.
/// </summary>
/// <param name="minLen">Minimum primer length.</param>
/// <returns>Last nucleotide or 255 if oligo too short to pop.</returns>
public byte Pop(int minLen)
{
if (IsPopAllowed(minLen))
{
byte item = this.GeneSpecific[0];
this.GeneSpecific = this.GeneSpecific.GetSubSequence(0, this.GeneSpecific.Count - 1);
this.Sequence = new Sequence(Alphabets.DNA, Overlapping.ToString() + GeneSpecific.ToString());
this.PrimerTemperature = GetSimpleMeltingTemperature(GeneSpecific);
return(item);
}
else
{
return(255);
}
}
/// <summary>
/// Cut the first nucleotide off.
/// </summary>
/// <param name="minLen">Minimum overlap length.</param>
/// <returns>First nucleotide or 255 if oligo too short to dequeue.</returns>
public byte Dequeue(int minLen)
{
if (IsDequeAllowed(minLen))
{
byte item = this.Overlapping[this.Overlapping.Count - 1];
this.Overlapping = this.Overlapping.GetSubSequence(1, this.Overlapping.Count - 1);
this.Sequence = new Sequence(Alphabets.DNA, Overlapping.ToString() + GeneSpecific.ToString());
this.Temperature = GetSimpleMeltingTemperature(Overlapping);
return(item);
}
else
{
return(255);
}
}
private void OnPlace()
{
if (CanPlace.Invoke(StrokeCount))
{
for (int i = 0; i < HiddenPieces.Count; i++)
{
HiddenPieces [i].gameObject.SetActive(true);
}
HiddenPieces.Clear();
Dictionary <Vector4, ModularPlacableObject> NewlyPlaced = new Dictionary <Vector4, ModularPlacableObject> ();
ForEachStrokePoint((Vector4 Position, StrokeType Type, Quaternion Rotation) => {
if (PlacableFilter(Position))
{
NewlyPlaced.Add(Position, PlaceObjectAt(Position, Rotation, Type));
}
StrokeStartPos = Position; // set Stroke start pos to be last
}, (GameObject Overlapping) => {
var ModularPlacable = Overlapping.GetComponent <ModularPlacableObject>();
if (ModularPlacable != null)
{
OnDeleted.Invoke(Overlapping.GetComponent <ModularPlacableObject>());
} // invoke on deleted callback
ModularPlacable.gameObject.SetActive(false);
ModularPlacable.Destroy();
}, (Vector4 Position, StrokeType Type, Quaternion Rotation) => { // for each newly placed item
if (NewlyPlaced.ContainsKey(Position))
{
OnPlaced.Invoke(NewlyPlaced[Position]);
}
});
foreach (var Placed in NewlyPlaced)
{
Placed.Value.OnPlaced();
} // on placed event
}
}
public void Intervals()
{
List <int[]> result = Overlapping.Intervals(new int[][] {
new int[] { 1, 3 },
new int[] { 2, 4 },
new int[] { 5, 7 },
new int[] { 6, 8 },
});
Assert.Equal(1, result[0][0]);
Assert.Equal(4, result[0][1]);
Assert.Equal(5, result[1][0]);
Assert.Equal(8, result[1][1]);
result = Overlapping.Intervals(new int[][] {
new int[] { 6, 8 },
new int[] { 1, 9 },
new int[] { 2, 4 },
new int[] { 4, 7 },
});
Assert.Equal(1, result[0][0]);
Assert.Equal(9, result[0][1]);
}
