public override string ToString()
{
if ((ReferenceAlleleString == null || ReferenceAlleleString == "") && (SecondAlleleString == null || SecondAlleleString == ""))
{
return(ChromosomeID + ":" + OneBasedStart.ToString() + "-" + OneBasedEnd.ToString() + "[" + VarType.ToString() + "]");
}
return(ChromosomeID //
+ ":" + OneBasedStart.ToString() //
+ "_" + ReferenceAlleleString //
+ "/" + SecondAlleleString
+ "_" + Genotype.Type.ToString());
}
public MetadataListItem <List <string> > GetGtfFeatureMetadata()
{
var feature = new MetadataListItem <List <string> >(FeatureType, GetGtfAttributes());
feature.SubItems["source"] = new List <string> {
Source.ToString()
};
feature.SubItems["start"] = new List <string> {
OneBasedStart.ToString()
};
feature.SubItems["end"] = new List <string> {
OneBasedEnd.ToString()
};
if (Strand != ".")
{
feature.SubItems["strand"] = new List <string> {
Strand.ToString()
};
} // might take in features without strand later on
return(feature);
}