public OntologyManager(string urlOntologia)
        {
            //obtenemos la ruta para la ontologia
            url = urlOntologia;

            //carga el manejador de ontologias
            if (ontologyManager == null)
            {
                ontologyManager = OWLManager.createOWLOntologyManager();
            }
        }
Пример #2
0
        /// <summary>
        /// Searches for reasoners in reasonerDllFolder, instantiate a reasoner and shows the info about this reasoner.
        /// </summary>
        /// <param name="reasonerDllFolder"></param>
        public static void GetOwlInfo(string reasonerDllFolder)
        {
            manager = OWLManager.createOWLOntologyManager();
            OWLOntology ontology = manager.createOntology(ontologyIRI);

            ReasoningService aa       = new ReasoningService(reasonerDllFolder);
            OWLReasoner      reasoner = aa.reasonerFact.createReasoner(ontology);

            Console.WriteLine(aa.reasonerFact.getReasonerName() + " Version:" + aa.reasonerFact.getReasonerVersion() + "\r\n Description:" + aa.reasonerFact.getReasonerDescription());
            Console.WriteLine("Press enter to go further...");
            Console.ReadLine();
        }
        public static void Initialize(string ontologyProfilePath)
        {
            try
            {
                Manager = OWLManager.createOWLOntologyManager();
                //tento řádek je potřebný kvůli nedokonale převedené knihovně z javy, kvůli které se načítá owl parser
                [email protected] s = new [email protected]();


                // načtení owl souboru, který obsahuje metamodel a který každá vložená báze individuí importuje
                byte[] owlResourceUPMM = Properties.Resources.UPMM;
                java.io.ByteArrayInputStream upmmInputStream = new java.io.ByteArrayInputStream(owlResourceUPMM);
                OWLOntology ontologyUPMM = Manager.loadOntologyFromOntologyDocument(upmmInputStream);
                MetamodelIRI = ontologyUPMM.getOntologyID().getOntologyIRI();
                Trace.WriteLine("Loaded Metamodel Ontology : " + MetamodelIRI);

                // načtení owl báze konkrétního profilu
                java.io.File processModel     = new java.io.File(ontologyProfilePath);
                OWLOntology  knowledgeProfile = Manager.loadOntologyFromOntologyDocument(processModel);
                ProfileIRI = knowledgeProfile.getOntologyID().getOntologyIRI();
                Trace.WriteLine("Loaded Profile Ontology : " + ProfileIRI);


                // vytvoření reasoneru nad profilem
                Reasoner       = new StructuralReasonerFactory().createReasoner(knowledgeProfile, new SimpleConfiguration());
                PelletReasoner = new PelletReasonerFactory().createReasoner(knowledgeProfile, new SimpleConfiguration());
                //Reasoner = new Reasoner.ReasonerFactory().createReasoner(knowledgeProfile); HermiT
                Trace.WriteLine("Reasoner is running!");

                DataFactory = Manager.getOWLDataFactory();
            }
            catch (Exception ex)
            {
                throw new ApplicationException("Ontology loading failed!", ex);
            }
        }
Пример #4
0
        public static string GetOWLXML(CNL.DL.Paragraph para, bool owlXml, string externext, Dictionary <string, string> invUriMappings, AnnotationManager annotMan, string ontologyBase = null, Dictionary <string, Tuple <string, string> > prefixes = null, string defaultGuid = null, Dictionary <string, List <string> > owlOntologyAnnotation = null, string generatedBy = "CogniPy")
        {
            prefixes = prefixes ?? new Dictionary <string, Tuple <string, string> >();
            if (ontologyBase == null)
            {
                ontologyBase = "http://www.ontorion.com/ontologies/Ontology" + Guid.NewGuid().ToString("N");
            }

            //var ontologyBase = (ontologyNs ?? "http://www.ontorion.com/ontologies/Ontology" + Guid.NewGuid().ToString("N"));
            //if(!String.IsNullOrEmpty(defaultGuid))
            //    ontologyBase = (ontologyNs ?? "http://www.ontorion.com/ontologies/Ontology" + defaultGuid);

            if (!ontologyBase.EndsWith("/") && !ontologyBase.EndsWith("#") && !ontologyBase.Contains("#"))
            {
                ontologyBase += "#";
            }

            OWLOntologyManager manager = OWLManager.createOWLOntologyManager();

            CogniPy.ARS.Transform transform = new CogniPy.ARS.Transform();
            transform.InvUriMappings = invUriMappings;
            var df = manager.getOWLDataFactory();

            ontology = manager.createOntology(IRI.create(ontologyBase));

            org.semanticweb.owlapi.vocab.PrefixOWLOntologyFormat owlxmlFormat = null;
            if (owlXml)
            {
                owlxmlFormat = new org.semanticweb.owlapi.io.OWLXMLOntologyFormat();
            }
            else
            {
                owlxmlFormat = new org.semanticweb.owlapi.io.RDFXMLOntologyFormat();
            }

            owlxmlFormat.setDefaultPrefix(ontologyBase);

            foreach (var kv in prefixes)
            {
                owlxmlFormat.setPrefix(kv.Key.Replace("$", "."), kv.Value.Item1);                                                        // should we put here the Item2 (the location) and not the inner namespace???
                if (!String.IsNullOrEmpty(kv.Value.Item2) && !(kv.Value.Item2.EndsWith(".encnl") || kv.Value.Item2.EndsWith(".encnl#"))) // do not export cnl imports (not in OWL!)
                {
                    // here we need to use Item1 because we cannot export into OWL the specific location of the ontology ---> this is bad practice as in this way we loose the generality of the owl file
                    // imagine that the location is C://mydirectory/... and I add into an owl file: owl:import "C:/mydirectory/". This mean that only on my computer I will be able to import this file.
                    // On the other hand if we write owl:import "namespace of the file" there is a good chance that when someone else will open the file, the file will be imported from internet.

                    var decl = manager.getOWLDataFactory().getOWLImportsDeclaration(OWLPathUriTools.Path2IRI(kv.Value.Item1.TrimEnd('#')));
                    manager.applyChange(new AddImport(ontology, decl));
                }
            }

            manager.setOntologyFormat(ontology, owlxmlFormat);

            if (owlOntologyAnnotation != null)
            {
                foreach (var keyVal in owlOntologyAnnotation)
                {
                    foreach (string val in keyVal.Value)
                    {
                        manager.applyChange(new AddOntologyAnnotation(
                                                ontology,
                                                manager.getOWLDataFactory().getOWLAnnotation(
                                                    manager.getOWLDataFactory().getOWLAnnotationProperty(IRI.create(keyVal.Key)),
                                                    manager.getOWLDataFactory().getOWLLiteral(val))));
                    }
                }
            }

            transform.setOWLDataFactory(false, ontologyBase, df, owlxmlFormat, CNL.EN.CNLFactory.lex);

            var paraFromAnnotStatements = annotMan.getDLAnnotationAxioms();
            var stmts = para.Statements;

            foreach (var p in paraFromAnnotStatements)
            {
                stmts.AddRange(p.Value);
            }
            var conv = transform.Convert(new CogniPy.CNL.DL.Paragraph(null)
            {
                Statements = stmts
            });

            var om = new org.coode.xml.OWLOntologyXMLNamespaceManager(manager, ontology);

            foreach (var axiom in conv.axioms)
            {
                if (axiom.comment != null)
                {
                    var dp = axiom.comment.IndexOf(':');
                    var x  = axiom.comment.Substring(0, dp);
                    if (x.Trim() == "Namespace")
                    {
                        var ontologyIri = axiom.comment.Substring(dp + 1).Trim();
                        if (ontologyIri.EndsWith("."))
                        {
                            ontologyIri = ontologyIri.Substring(0, ontologyIri.Length - 1);
                        }
                        if (ontologyIri.StartsWith("\'") && ontologyIri.Length > 2)
                        {
                            ontologyIri = ontologyIri.Substring(1, ontologyIri.Length - 2).Replace("\'\'", "\'");
                        }
                        manager.removeOntology(ontology);
                        ontology = manager.createOntology(IRI.create(ontologyIri));
                        om.setDefaultNamespace(ontologyIri + "#");
                        transform.setOWLDataFactory(true, ontologyBase, df, owlxmlFormat, CNL.EN.CNLFactory.lex);
                    }
                    else if (x.Trim() == "References")
                    {
                        var refs = CNLTools.ParseReferences(axiom.comment.Substring(dp));
                        foreach (Match match in refs)
                        {
                            var onto = match.Groups["ont"].Value;
                            if (onto.StartsWith("\'") && onto.Length > 2)
                            {
                                onto = onto.Substring(1, onto.Length - 2).Replace("\'\'", "\'").Trim();
                            }

                            if (!string.IsNullOrEmpty(onto))
                            {
                                if (onto.ToLower().EndsWith(".encnl"))
                                {
                                    onto = OWLConverter.PathToIRIString(onto.Substring(0, onto.Length - ".encnl".Length) + externext);
                                }


                                var ns = match.Groups["ns"].Value;
                                if (ns.StartsWith("\'") && ns.Length > 2)
                                {
                                    ns = ns.Substring(1, ns.Length - 2).Replace("\'\'", "\'").Trim();
                                }
                                else
                                if (string.IsNullOrEmpty(ns))
                                {
                                    ns = onto;
                                }

                                om.setPrefix(match.Groups["pfx"].Value, ns);
                                owlxmlFormat.setPrefix(match.Groups["pfx"].Value, ns);
                                var decl = manager.getOWLDataFactory().getOWLImportsDeclaration(OWLPathUriTools.Path2IRI(onto));
                                manager.applyChange(new AddImport(ontology, decl));
                            }
                        }
                    }
                    else
                    {
                        //manager.applyChange(new AddOntologyAnnotation(
                        //    ontology,
                        //    manager.getOWLDataFactory().getOWLAnnotation(
                        //         manager.getOWLDataFactory().getOWLAnnotationProperty(IRI.create(ontologyBase + x)),
                        //         manager.getOWLDataFactory().getOWLLiteral(axiom.comment.Substring(dp)))));
                    }
                }
                else if (axiom.axiom != null)
                {
                    manager.addAxiom(ontology, axiom.axiom);
                }
            }

            foreach (var axiom in conv.additions)
            {
                manager.addAxiom(ontology, axiom);
            }

            var ontout = new org.semanticweb.owlapi.io.StringDocumentTarget();

            manager.saveOntology(ontology, owlxmlFormat, ontout);
            manager.removeOntology(ontology);
            var retdoc = new XmlDocument();

            retdoc.LoadXml(ontout.toString());
            foreach (var elem in retdoc.ChildNodes)
            {
                if (elem is XmlComment)
                {
                    retdoc.RemoveChild(elem as XmlComment);
                }
            }
            retdoc.AppendChild(retdoc.CreateComment("Generated by " + generatedBy + ", (with support from OwlApi)"));

            return(SerializeDoc(retdoc));
        }