//------------------------------------------------------------------
// INamedSequence
public abstract string GetDecoratedName(string coreName, PrettyPrintContext context, INucleotideSequence root, NAMED_SEQUENCE_DECORATOR caller, out NAMED_SEQUENCE_DECORATOR callee);
//--------------------------------------------------------------------------
// INamedSequence
public override string GetDecoratedName(string coreName, PrettyPrintContext ppContext, INucleotideSequence root, NAMED_SEQUENCE_DECORATOR caller, out NAMED_SEQUENCE_DECORATOR callee)
{
return this.GetDecoratedNameDoubleHelper(coreName, ppContext, root, caller, out callee, "{0}'", NAMED_SEQUENCE_DECORATOR.COMPLEMENT);
}
//--------------------------------------------------------------------------
// INamedSequence
public override string GetDecoratedName(string coreName, PrettyPrintContext context, INucleotideSequence root, NAMED_SEQUENCE_DECORATOR caller, out NAMED_SEQUENCE_DECORATOR callee)
{
return this.GetDecoratedNameDoubleHelper(coreName, context, root, caller, out callee, "reversed({0})", NAMED_SEQUENCE_DECORATOR.REVERSE);
}
protected string GetDecoratedNameDoubleHelper(string coreName, PrettyPrintContext context, INucleotideSequence root, NAMED_SEQUENCE_DECORATOR caller, out NAMED_SEQUENCE_DECORATOR callee,
string format,
NAMED_SEQUENCE_DECORATOR usFlavor
)
// Shared code for reversing and complementing
{
callee = usFlavor;
//
if (this == root)
return context.FormatDisplayName(coreName, this.Id);
//
if (this.target is INamedSequence)
{
INamedSequence decorator = this.target as INamedSequence;
NAMED_SEQUENCE_DECORATOR decoratorFlavor;
if (caller == usFlavor)
{
// us and caller are of same flavor: just forward on to the target so that the two cancel
return decorator.GetDecoratedName(coreName, context, root, NAMED_SEQUENCE_DECORATOR.NONE, out decoratorFlavor);
}
else
{
// get from target
string his = (this.target as INamedSequence).GetDecoratedName(coreName, context, root, usFlavor, out decoratorFlavor);
//
if (decoratorFlavor==usFlavor)
return his;
else
return string.Format(format, his);
}
}
return string.Format(format, context.FormatDisplayName(coreName, this.Id));
}
//--------------------------------------------------------------------------
// INamedSequence
public override string GetDecoratedName(string coreName, PrettyPrintContext context, INucleotideSequence root, NAMED_SEQUENCE_DECORATOR caller, out NAMED_SEQUENCE_DECORATOR callee)
// Default implementation that just stops at us if we're the root and forwards on to target if not
{
callee = NAMED_SEQUENCE_DECORATOR.NONE;
//
if (this == root)
return context.FormatDisplayName(coreName, this.Id);
//
if (this.target is INamedSequence)
{
INamedSequence decorator = this.target as INamedSequence;
NAMED_SEQUENCE_DECORATOR decoratorFlavor;
return decorator.GetDecoratedName(coreName, context, root, NAMED_SEQUENCE_DECORATOR.NONE, out decoratorFlavor);
}
//
return context.FormatDisplayName(coreName, this.Id);
}
//--------------------------------------------------------------------------
// INamedSequence
public override string GetDecoratedName(string coreName, PrettyPrintContext context, INucleotideSequence root, NAMED_SEQUENCE_DECORATOR caller, out NAMED_SEQUENCE_DECORATOR callee)
{
callee = NAMED_SEQUENCE_DECORATOR.NONE;
return context.FormatDisplayName(coreName, this.Id);
}
