public static int Main(string[] args)
{
var options = new Options();
var asmName = typeof(Program).GetTypeInfo().Assembly.GetName();
var programVersion = typeof(Program).GetTypeInfo().Assembly.GetName().Version;
var version = $"version {programVersion.Major}.{programVersion.Minor}.{programVersion.Build}";
if (!CommandLineParser <Options> .ParseArgs(args, options, asmName.Name, version) || !options.Validate())
{
System.Threading.Thread.Sleep(1500);
return(-1);
}
options.ReportSettings();
if (options.AllowHighResourceUsage)
{
MzidMerging.MergeMzidsDivideAndConquer(options);
}
else
{
MzidMerging.MergeMzids(options);
}
return(0);
}
public void MergeMzidsDivideConquer()
{
var inputs = new List <string>
{
@"C:\Temp\MzidMerger\Buckley_12Ccell_Ag_09_14_QE_RR_29Sep17_Pippin_17-07-05_msgfplus_Part1.mzid.gz",
@"C:\Temp\MzidMerger\Buckley_12Ccell_Ag_09_14_QE_RR_29Sep17_Pippin_17-07-05_msgfplus_Part2.mzid.gz",
@"C:\Temp\MzidMerger\Buckley_12Ccell_Ag_09_14_QE_RR_29Sep17_Pippin_17-07-05_msgfplus_Part3.mzid.gz",
@"C:\Temp\MzidMerger\Buckley_12Ccell_Ag_09_14_QE_RR_29Sep17_Pippin_17-07-05_msgfplus_Part4.mzid.gz",
@"C:\Temp\MzidMerger\Buckley_12Ccell_Ag_09_14_QE_RR_29Sep17_Pippin_17-07-05_msgfplus_Part5.mzid.gz",
@"C:\Temp\MzidMerger\Buckley_12Ccell_Ag_09_14_QE_RR_29Sep17_Pippin_17-07-05_msgfplus_Part6.mzid.gz",
@"C:\Temp\MzidMerger\Buckley_12Ccell_Ag_09_14_QE_RR_29Sep17_Pippin_17-07-05_msgfplus_Part7.mzid.gz",
@"C:\Temp\MzidMerger\Buckley_12Ccell_Ag_09_14_QE_RR_29Sep17_Pippin_17-07-05_msgfplus_Part8.mzid.gz",
@"C:\Temp\MzidMerger\Buckley_12Ccell_Ag_09_14_QE_RR_29Sep17_Pippin_17-07-05_msgfplus_Part9.mzid.gz",
@"C:\Temp\MzidMerger\Buckley_12Ccell_Ag_09_14_QE_RR_29Sep17_Pippin_17-07-05_msgfplus_Part10.mzid.gz",
@"C:\Temp\MzidMerger\Buckley_12Ccell_Ag_09_14_QE_RR_29Sep17_Pippin_17-07-05_msgfplus_Part11.mzid.gz",
@"C:\Temp\MzidMerger\Buckley_12Ccell_Ag_09_14_QE_RR_29Sep17_Pippin_17-07-05_msgfplus_Part12.mzid.gz",
@"C:\Temp\MzidMerger\Buckley_12Ccell_Ag_09_14_QE_RR_29Sep17_Pippin_17-07-05_msgfplus_Part13.mzid.gz",
@"C:\Temp\MzidMerger\Buckley_12Ccell_Ag_09_14_QE_RR_29Sep17_Pippin_17-07-05_msgfplus_Part14.mzid.gz",
@"C:\Temp\MzidMerger\Buckley_12Ccell_Ag_09_14_QE_RR_29Sep17_Pippin_17-07-05_msgfplus_Part15.mzid.gz",
@"C:\Temp\MzidMerger\Buckley_12Ccell_Ag_09_14_QE_RR_29Sep17_Pippin_17-07-05_msgfplus_Part16.mzid.gz",
@"C:\Temp\MzidMerger\Buckley_12Ccell_Ag_09_14_QE_RR_29Sep17_Pippin_17-07-05_msgfplus_Part17.mzid.gz",
@"C:\Temp\MzidMerger\Buckley_12Ccell_Ag_09_14_QE_RR_29Sep17_Pippin_17-07-05_msgfplus_Part18.mzid.gz",
@"C:\Temp\MzidMerger\Buckley_12Ccell_Ag_09_14_QE_RR_29Sep17_Pippin_17-07-05_msgfplus_Part19.mzid.gz",
@"C:\Temp\MzidMerger\Buckley_12Ccell_Ag_09_14_QE_RR_29Sep17_Pippin_17-07-05_msgfplus_Part20.mzid.gz",
@"C:\Temp\MzidMerger\Buckley_12Ccell_Ag_09_14_QE_RR_29Sep17_Pippin_17-07-05_msgfplus_Part21.mzid.gz",
@"C:\Temp\MzidMerger\Buckley_12Ccell_Ag_09_14_QE_RR_29Sep17_Pippin_17-07-05_msgfplus_Part22.mzid.gz",
@"C:\Temp\MzidMerger\Buckley_12Ccell_Ag_09_14_QE_RR_29Sep17_Pippin_17-07-05_msgfplus_Part23.mzid.gz",
@"C:\Temp\MzidMerger\Buckley_12Ccell_Ag_09_14_QE_RR_29Sep17_Pippin_17-07-05_msgfplus_Part24.mzid.gz",
@"C:\Temp\MzidMerger\Buckley_12Ccell_Ag_09_14_QE_RR_29Sep17_Pippin_17-07-05_msgfplus_Part25.mzid.gz",
};
const string output = @"C:\Temp\MzidMerger\Buckley_12Ccell_Ag_09_14_QE_RR_29Sep17_Pippin_17-07-05_msgfplus_dc.mzid.gz";
var stopWatch = System.Diagnostics.Stopwatch.StartNew();
var options = new Options
{
OutputFilePath = output,
MaxSpecEValue = 100,
MaxThreads = 6,
};
options.FilesToMerge.AddRange(inputs);
MzidMerging.MergeMzidsDivideAndConquer(options);
stopWatch.Stop();
Console.WriteLine("Total processing time: {0:g}", stopWatch.Elapsed);
}
public void MergeMzidsFilterExcerpt()
{
var inputs = new List <string>
{
@"C:\Temp\MzidMerger\Buckley_12Ccell_Ag_09_14_QE_RR_29Sep17_Pippin_17-07-05_msgfplus_Part1.mzid.gz",
@"C:\Temp\MzidMerger\Buckley_12Ccell_Ag_09_14_QE_RR_29Sep17_Pippin_17-07-05_msgfplus_Part2.mzid.gz",
@"C:\Temp\MzidMerger\Buckley_12Ccell_Ag_09_14_QE_RR_29Sep17_Pippin_17-07-05_msgfplus_Part3.mzid.gz"
};
const string output = @"C:\Temp\MzidMerger\Buckley_12Ccell_Ag_09_14_QE_RR_29Sep17_Pippin_17-07-05_msgfplus_filter_excerpt.mzid.gz";
var stopWatch = System.Diagnostics.Stopwatch.StartNew();
var options = new Options
{
OutputFilePath = output,
MaxSpecEValue = 1e-10,
};
options.FilesToMerge.AddRange(inputs);
MzidMerging.MergeMzids(options);
stopWatch.Stop();
Console.WriteLine("Total processing time: {0:g}", stopWatch.Elapsed);
}
