public void AddProteinIngredient(string path, Bounds bounds, List <Vector4> atomSpheres, Color color,
List <float> clusterLevels = null,
bool nolod = false)
{
if (SceneHierarchy.Contains(path))
{
throw new Exception("Invalid protein path: " + path);
}
if (ProteinIngredientNames.Contains(path))
{
throw new Exception("Invalid protein path: " + path);
}
if (clusterLevels != null)
{
if (NumLodLevels != 0 && NumLodLevels != clusterLevels.Count)
{
throw new Exception("Uneven cluster levels number: " + path);
}
}
if (color == null)
{
color = MyUtility.GetRandomColor();
}
AddIngredientToHierarchy(path);
ProteinColors.Add(color);
ProteinToggleFlags.Add(1);
ProteinIngredientNames.Add(path);
ProteinRadii.Add(AtomHelper.ComputeRadius(atomSpheres));
ProteinAtomCount.Add(atomSpheres.Count);
ProteinAtomStart.Add(ProteinAtoms.Count);
ProteinAtoms.AddRange(atomSpheres);
if (clusterLevels != null)
{
NumLodLevels = clusterLevels.Count;
foreach (var level in clusterLevels)
{
var numClusters = Math.Max(atomSpheres.Count * level, 5);
List <Vector4> clusterSpheres;
if (!nolod)
{
clusterSpheres = KMeansClustering.GetClusters(atomSpheres, (int)numClusters);
}
else
{
clusterSpheres = new List <Vector4>(atomSpheres);
}
ProteinAtomClusterCount.Add(clusterSpheres.Count);
ProteinAtomClusterStart.Add(ProteinAtomClusters.Count);
ProteinAtomClusters.AddRange(clusterSpheres);
}
}
}