private bool anyLinkedNodes(MoleculeNode moleculeNode)
{
var moleculeNodes = reactionDiagramManager.GetMoleculeNodes(moleculeNode.Name);
var reactionNodes = getLinkedReactionsForMoleculeNode(moleculeNode);
return(reactionNodes.Any() && moleculeNodes.Count() == 1);
}
private void getLinkProperties(
IBaseNode node1, IBaseNode node2, object portObject1, object portObject2,
out ReactionNode reactionNode, out MoleculeNode moleculeNode, out ReactionLinkType reactionLinkType)
{
var rNode1 = node1 as ReactionNode;
var rNode2 = node2 as ReactionNode;
if (rNode1 == null && rNode2 == null)
{
throw new MoBiException(AppConstants.Exceptions.ReactionNodeMissingInLink);
}
var mNode1 = node1 as MoleculeNode;
var mNode2 = node2 as MoleculeNode;
if (mNode1 == null && mNode2 == null)
{
throw new MoBiException(AppConstants.Exceptions.MoleculeNodeMissingInLink);
}
if (rNode1 != null)
{
reactionNode = rNode1;
moleculeNode = mNode2;
reactionLinkType = (ReactionLinkType)portObject1;
}
else
{
reactionNode = rNode2;
moleculeNode = mNode1;
reactionLinkType = (ReactionLinkType)portObject2;
}
}
private void createTransportLink(IBaseLink neighborLink, MoleculeNode moleculeNode)
{
var transportLink = new TransportLink();
transportLink.Initialize(neighborLink as NeighborLink, moleculeNode);
transportLink.SetColorFrom(DiagramOptions.DiagramColors);
}
private void createObserverLink(ObserverNode observerNode, MoleculeNode moleculeNode)
{
var observerLink = new ObserverLink();
observerLink.Initialize(observerNode, moleculeNode);
observerLink.SetColorFrom(DiagramOptions.DiagramColors);
observerLink.IsVisible = DiagramOptions.ObserverLinksVisible;
}
public void RemoveMoleculeNode(MoleculeNode moleculeNode)
{
if (anyLinkedNodes(moleculeNode))
{
promptForRemoveLinks();
return;
}
AddCommand(new RemoveMoleculeFromReactionBuildingBlockCommand(_model, moleculeNode.Id).Run(_context));
}
private bool moleculeNodeWillBeUnlinkedAfterDelete(MoleculeNode moleculeNode, IEnumerable <GoObject> itemsBeingDeleted)
{
var linkedReactions = getLinkedReactionsForMoleculeNode(moleculeNode);
return(linkedReactions.All(itemsBeingDeleted.Contains));
}
private IEnumerable <ReactionNode> getLinkedReactionsForMoleculeNode(MoleculeNode moleculeNode)
{
return(moleculeNode.GetLinkedNodes <ReactionNode>());
}
private bool anyLinkedNodes(MoleculeNode moleculeNode)
{
var reactionNodes = getLinkedReactionsForMoleculeNode(moleculeNode);
return(reactionNodes.Any());
}
private void createReactionLink(ReactionLinkType type, ReactionNode reactionNode, MoleculeNode moleculeNode)
{
var reactionLink = new ReactionLink();
reactionLink.Initialize(type, reactionNode, moleculeNode);
reactionLink.SetColorFrom(DiagramOptions.DiagramColors);
}
