public TextSequence GetTextSequenceAtAaIndex(int residue) { Font font = ModFontHolder.Plain; Color color = Color.Black; String strAminoAcid = UnmodifiedSequence.Substring(residue, 1); var modsAtResidue = GetModificationsAtResidue(residue).ToArray(); if (modsAtResidue.Length == 0) { return(new TextSequence { Color = color, Font = font, Text = strAminoAcid }); } var firstEntry = modsAtResidue[0]; color = ModFontHolder.GetModColor(firstEntry.Item1); if (modsAtResidue.Skip(1).All(entry => entry.Item2.Equals(firstEntry.Item2))) { font = ModFontHolder.GetModFont(firstEntry.Item1); return(new TextSequence { Color = color, Font = font, Text = strAminoAcid + DisplayModificationOption.GetModificationText(SrmSettings, firstEntry.Item2) }); } font = IsotopeLabelType.light.Equals(firstEntry.Item1) ? ModFontHolder.LightAndHeavy : ModFontHolder.GetModFont(firstEntry.Item1); string modText; if (DisplayModificationOption == DisplayModificationOption.NOT_SHOWN) { modText = strAminoAcid; } else { modText = strAminoAcid + @"[*]"; } return(new TextSequence { Color = color, Font = font, Text = modText }); }
/// <summary> /// Creates a text sequence with the fully modified peptide sequence text /// and font information for a given label type. /// </summary> private static TextSequence CreateTypeTextSequence(PeptideDocNode nodePep, SrmSettings settings, IsotopeLabelType labelType, ModFontHolder fonts) { var calc = settings.TryGetPrecursorCalc(labelType, nodePep.ExplicitMods); if (calc == null) { return(null); } return(new TextSequence { Text = nodePep.IsProteomic ? calc.GetModifiedSequence(nodePep.Peptide.Target, SequenceModFormatType.mass_diff_narrow, false).Sequence : nodePep.CustomMolecule.DisplayName, Font = fonts.GetModFont(labelType), Color = ModFontHolder.GetModColor(labelType) }); }
/// <summary> /// Creates a text sequence with the fully modified peptide sequence text /// and font information for a given label type. /// </summary> private static TextSequence CreateTypeTextSequence(PeptideDocNode nodePep, SrmSettings settings, IsotopeLabelType labelType, ModFontHolder fonts) { var calc = settings.TryGetPrecursorCalc(labelType, nodePep.ExplicitMods); if (calc == null) { return(null); } return(new TextSequence { Text = nodePep.IsProteomic ? calc.GetModifiedSequence(nodePep.Peptide.Sequence, true) : nodePep.CustomIon.DisplayName, Font = fonts.GetModFont(labelType), Color = ModFontHolder.GetModColor(labelType) }); }
/// <summary> /// Creates a text sequence with the fully modified peptide sequence text /// and font information for a given label type. /// </summary> private static TextSequence CreateTypeTextSequence(PeptideDocNode nodePep, SrmSettings settings, IsotopeLabelType labelType, ModFontHolder fonts) { var calc = settings.TryGetPrecursorCalc(labelType, nodePep.ExplicitMods); if (calc == null) return null; return new TextSequence { Text = nodePep.IsProteomic ? calc.GetModifiedSequence(nodePep.Peptide.Sequence, true) : nodePep.CustomIon.DisplayName, Font = fonts.GetModFont(labelType), Color = ModFontHolder.GetModColor(labelType) }; }
public TextSequence GetTextSequenceAtAaIndex(DisplayModificationOption displayModificationOption, int residue) { Font font = ModFontHolder.Plain; Color color = Color.Black; string strAminoAcid = UnmodifiedSequence.Substring(residue, 1); var modsAtResidue = GetModificationsAtResidue(displayModificationOption, residue).ToArray(); if (residue == CrosslinkedIndexAa || modsAtResidue.Any(labeledMod => labeledMod.Item2.Any(mod => mod.ExplicitMod.LinkedPeptide != null)) || _lightSequenceInfo.LooplinkSites.Contains(residue)) { return(new TextSequence { Color = COLOR_CROSSLINK, Font = ModFontHolder.LightAndHeavy, Text = strAminoAcid }); } if (modsAtResidue.Length == 0) { return(new TextSequence { Color = color, Font = font, Text = strAminoAcid }); } var firstEntry = modsAtResidue[0]; color = ModFontHolder.GetModColor(firstEntry.Item1); var firstMismatch = modsAtResidue.Skip(1).FirstOrDefault(entry => !entry.Item2.Equals(firstEntry.Item2)); if (firstMismatch == null) { font = ModFontHolder.GetModFont(firstEntry.Item1); return(new TextSequence { Color = color, Font = font, Text = strAminoAcid + displayModificationOption.GetModificationText(SrmSettings, firstEntry.Item2) }); } if (IsotopeLabelType.light.Equals(firstEntry.Item1)) { font = ModFontHolder.LightAndHeavy; color = ModFontHolder.GetModColor(firstMismatch.Item1); } else { font = ModFontHolder.LightAndHeavy; } string modText; if (displayModificationOption == DisplayModificationOption.NOT_SHOWN) { modText = strAminoAcid; } else { modText = strAminoAcid + @"[*]"; } return(new TextSequence { Color = color, Font = font, Text = modText }); }