private void ButtonBibTexAutoFind_Click(object sender, RoutedEventArgs e)
{
AugmentedBindable <PDFDocument> pdf_document_bindable = DataContext as AugmentedBindable <PDFDocument>;
if (null == pdf_document_bindable)
{
return;
}
bool found_bibtex = PDFMetadataInferenceFromBibTeXSearch.InferBibTeX(pdf_document_bindable.Underlying, true);
if (!found_bibtex)
{
if (MessageBoxes.AskQuestion("Qiqqa was unable to automatically find BibTeX for this document. Do you want to try using the BibTeX Sniffer?"))
{
GoogleBibTexSnifferControl sniffer = new GoogleBibTexSnifferControl();
sniffer.Show(pdf_document_bindable.Underlying);
}
}
}
void ButtonEZProxy_Click(object sender, RoutedEventArgs e)
{
string current_url = active_wbc.CurrentUri.ToString();
string ezproxy = ConfigurationManager.Instance.ConfigurationRecord.Proxy_EZProxy;
if (!String.IsNullOrEmpty(ezproxy))
{
string new_url = ezproxy.Replace("$@", Uri.EscapeUriString(current_url));
active_wbc.Navigate(new_url);
}
else
{
if (MessageBoxes.AskQuestion("Do you not have an EZProxy set. Do you want to open the Config Screen to set one?"))
{
MainWindowServiceDispatcher.Instance.OpenControlPanel();
}
}
e.Handled = true;
}
void MenuOpenOutside_Click(object sender, RoutedEventArgs e)
{
popup.Close();
FeatureTrackingManager.Instance.UseFeature(Features.Library_OpenOutsideQiqqa);
if (5 < pdf_documents.Count)
{
if (!MessageBoxes.AskQuestion("Are you sure you wish to open {0} document(s)?", pdf_documents.Count))
{
return;
}
}
foreach (var pdf_document in pdf_documents)
{
if (pdf_document.DocumentExists)
{
Process.Start(pdf_document.DocumentPath);
}
}
}
void MenuRemoveAllBibTeX_Click(object sender, RoutedEventArgs e)
{
popup.Close();
FeatureTrackingManager.Instance.UseFeature(Features.Library_RemoveAllBibTeX);
string warning_message = String.Format("You are about to remove EVERY BibTeX record from {0} document(s). This is irreversible and may lead to tears. Are you sure you want to do this?", pdf_documents.Count);
if (MessageBoxes.AskQuestion("{0}", warning_message))
{
if (MessageBoxes.AskQuestion("Are you REALLY sure?"))
{
foreach (var pdf_document in pdf_documents)
{
pdf_document.BibTex = "";
pdf_document.Bindable.NotifyPropertyChanged(() => pdf_document.BibTex);
}
MessageBoxes.Info("Your BibTeX records have been cleared.");
}
}
}
private void ButtonApplyReview_Click(object sender, RoutedEventArgs e)
{
List <PDFDocument> selected_pdf_documents = SelectedPDFDocuments;
if (null == selected_pdf_documents)
{
return;
}
if (!MessageBoxes.AskQuestion("Are you sure you want to mass-edit {0} documents?", selected_pdf_documents.Count))
{
return;
}
foreach (var pdf_document in selected_pdf_documents)
{
if (!String.IsNullOrEmpty(review_stub.ReadingStage))
{
pdf_document.ReadingStage = review_stub.ReadingStage;
pdf_document.Bindable.NotifyPropertyChanged(() => pdf_document.ReadingStage);
}
if (!String.IsNullOrEmpty(review_stub.Rating))
{
pdf_document.Rating = review_stub.Rating;
pdf_document.Bindable.NotifyPropertyChanged(() => pdf_document.Rating);
}
if (review_stub.IsFavourite.HasValue)
{
pdf_document.IsFavourite = review_stub.IsFavourite;
pdf_document.Bindable.NotifyPropertyChanged(() => pdf_document.IsFavourite);
}
if (review_stub.Color != NULL_COLOR)
{
pdf_document.Color = review_stub.Color;
pdf_document.Bindable.NotifyPropertyChanged(() => pdf_document.Color);
}
}
}
private void ButtonApplyTagsAdd_Click(object sender, RoutedEventArgs e)
{
List <PDFDocument> selected_pdf_documents = SelectedPDFDocuments;
if (null == selected_pdf_documents)
{
return;
}
HashSet <string> new_tags = TagTools.ConvertTagBundleToTags(tags_add_stub.Tags);
if (!MessageBoxes.AskQuestion("Are you sure you want to add {0} tags to {1} documents?"
, new_tags.Count
, selected_pdf_documents.Count))
{
return;
}
foreach (var pdf_document in selected_pdf_documents)
{
pdf_document.AddTag(tags_add_stub.Tags);
}
}
private static string GetLastStyleFilename()
{
string style_filename = ConfigurationManager.Instance.ConfigurationRecord.InCite_LastStyleFile;
string new_style_filename = FindValidStyleFilename(style_filename);
if (0 != String.Compare(new_style_filename, style_filename))
{
Logging.Warn("Using suggested CSL file {0} instead of missing file {1}", new_style_filename, style_filename);
}
if (!String.IsNullOrEmpty(new_style_filename))
{
return(new_style_filename);
}
else
{
if (MessageBoxes.AskQuestion("You need to please select a CSL style file for your citations.\nDo you want to open InCite to choose one now?"))
{
MainWindowServiceDispatcher.Instance.OpenInCite();
}
return(null);
}
}
public void Regenerate(AsyncCallback callback)
{
Utilities.LockPerfTimer l1_clk = Utilities.LockPerfChecker.Start();
lock (in_progress_lock)
{
l1_clk.LockPerfTimerStop();
if (regenerating_in_progress)
{
Logging.Info("Not regenerating AutoTags because a regeneration is already in progress.");
return;
}
regenerating_in_progress = true;
}
Stopwatch clk = Stopwatch.StartNew();
try
{
Logging.Info("+AITagManager is starting regenerating");
StatusManager.Instance.UpdateStatusBusy("AITags", "Loading documents");
List <PDFDocument> pdf_documents = library.PDFDocuments;
int count_title_by_user = 0;
int could_title_by_suggest = 0;
StatusManager.Instance.UpdateStatusBusy("AITags", "Deciding whether to use suggested titles");
foreach (PDFDocument pdf_document in pdf_documents)
{
if (pdf_document.IsTitleGeneratedByUser)
{
++count_title_by_user;
}
else
{
++could_title_by_suggest;
}
}
bool use_suggested_titles = could_title_by_suggest > count_title_by_user;
StatusManager.Instance.UpdateStatusBusy("AITags", "Scanning titles");
List <string> titles = new List <string>();
foreach (PDFDocument pdf_document in pdf_documents)
{
if (use_suggested_titles || pdf_document.IsTitleGeneratedByUser)
{
titles.Add(pdf_document.TitleCombined);
}
}
StatusManager.Instance.UpdateStatusBusy("AITags", "Generating AutoTags");
// Get the black/whitelists
List <string> words_blacklist = new List <string>();
List <string> words_whitelist = new List <string>();
{
List <BlackWhiteListEntry> entries = library.BlackWhiteListManager.ReadList();
foreach (var entry in entries)
{
if (entry.is_deleted)
{
continue;
}
switch (entry.list_type)
{
case BlackWhiteListEntry.ListType.White:
words_whitelist.Add(entry.word);
break;
case BlackWhiteListEntry.ListType.Black:
words_blacklist.Add(entry.word);
break;
default:
Logging.Warn("Unknown black/whitelist type " + entry.list_type);
break;
}
}
}
// Generate them
CountingDictionary <NGram> ai_tags = BuzzwordGenerator.GenerateBuzzwords(titles, words_blacklist, words_whitelist, true);
Logging.Info("Generated {0} autotags", ai_tags.Count);
if (ai_tags.Count < 20)
{
Logging.Warn("There are too few autotags (only {0}), so not supressing Scrabble words...", ai_tags.Count);
ai_tags = BuzzwordGenerator.GenerateBuzzwords(titles, words_blacklist, words_whitelist, false);
Logging.Info("Generated {0} autotags without Scrabble suppression", ai_tags.Count);
}
StatusManager.Instance.UpdateStatusBusy("AITags", "AutoTagging documents");
AITags ai_tags_record = new AITags();
// Go through each ngram and see what documents contain it
StatusManager.Instance.ClearCancelled("AITags");
List <NGram> ai_tags_list = new List <NGram>(ai_tags.Keys);
for (int i = 0; i < ai_tags_list.Count; ++i)
{
try
{
NGram ai_tag = ai_tags_list[i];
string tag = ai_tag.text;
if (StatusManager.Instance.IsCancelled("AITags"))
{
break;
}
StatusManager.Instance.UpdateStatusBusy("AITags", String.Format("AutoTagging papers with '{0}'", tag), i, ai_tags_list.Count, true);
// Surround the tag with quotes and search the index
string search_tag = "\"" + tag + "\"";
List <IndexPageResult> fingerprints_potential = LibrarySearcher.FindAllPagesMatchingQuery(library, search_tag);
if (null != fingerprints_potential)
{
// Skip this tag if too many documents have it...
if (ai_tag.is_acronym && fingerprints_potential.Count > 0.05 * pdf_documents.Count)
{
Logging.Info("Skipping AutoTag {0} because too many documents have it...", tag);
continue;
}
foreach (var fingerprint_potential in fingerprints_potential)
{
// Non-acronyms are definitely tagged
if (!ai_tag.is_acronym)
{
ai_tags_record.Associate(tag, fingerprint_potential.fingerprint);
}
else
{
// Acronyms need to be done manually because we only want the upper case ones...
PDFDocument pdf_document = library.GetDocumentByFingerprint(fingerprint_potential.fingerprint);
if (null != pdf_document && !pdf_document.Deleted)
{
bool have_tag = false;
if (!have_tag)
{
string doc_title = pdf_document.TitleCombined;
if (!String.IsNullOrEmpty(doc_title))
{
if (!ai_tag.is_acronym)
{
doc_title = doc_title.ToLower();
}
if (doc_title.Contains(tag))
{
have_tag = true;
}
}
}
if (!have_tag)
{
string doc_comment = pdf_document.Comments;
if (!String.IsNullOrEmpty(doc_comment))
{
if (!ai_tag.is_acronym)
{
doc_comment = doc_comment.ToLower();
}
if (doc_comment.Contains(tag))
{
have_tag = true;
}
}
}
if (!have_tag && pdf_document.DocumentExists)
{
foreach (var page_result in fingerprint_potential.page_results)
{
if (have_tag)
{
break;
}
int page = page_result.page;
WordList page_word_list = pdf_document.PDFRenderer.GetOCRText(page);
if (null != page_word_list)
{
foreach (Word word in page_word_list)
{
if (tag == word.Text)
{
have_tag = true;
break;
}
}
}
}
}
// If we have this tag, record it
if (have_tag)
{
ai_tags_record.Associate(tag, fingerprint_potential.fingerprint);
}
}
else
{
Logging.Warn("Could not find a document matching fingerprint {0}", fingerprint_potential);
}
}
}
}
}
catch (Exception ex)
{
Logging.Error(ex, "There was an exception while processing one of the autotags");
}
}
bool use_new_autotags = true;
if (StatusManager.Instance.IsCancelled("AITags"))
{
if (!MessageBoxes.AskQuestion("You cancelled the generation of your AutoTags. Do you want to use the partially generated AutoTags (YES) or keep your old AutoTags (NO)?"))
{
use_new_autotags = false;
}
}
if (use_new_autotags)
{
StatusManager.Instance.UpdateStatusBusy("AITags", "Saving AutoTags");
SerializeFile.ProtoSave <AITags>(Filename_Store, ai_tags_record);
current_ai_tags_record = ai_tags_record;
}
StatusManager.Instance.UpdateStatus("AITags", "AutoTags generated!");
}
finally
{
Utilities.LockPerfTimer l2_clk = Utilities.LockPerfChecker.Start();
lock (in_progress_lock)
{
l2_clk.LockPerfTimerStop();
regenerating_in_progress = false;
}
Logging.Info("-AITagManager is finished regenerating (time spent: {0} ms)", clk.ElapsedMilliseconds);
}
// Call any callback that might be interested
callback?.Invoke(null);
}
internal static void Export(Library library, List <PDFDocument> pdf_documents)
{
StatusManager.Instance.UpdateStatusBusy("CitationMatrix", "Exporting Citation Maxtrix");
// Ask the user what they want
bool export_inbound_citations = MessageBoxes.AskQuestion("Do you want to follow one layer of INBOUND citations?");
bool export_outbound_citations = MessageBoxes.AskQuestion("Do you want to follow one layer of OUTBOUND citations?");
bool export_bibtex_keys = MessageBoxes.AskQuestion("Do you want to use BibTeX keys instead of Qiqqa fingerprints where possible?");
SaveFileDialog save_file_dialog = new SaveFileDialog();
{
save_file_dialog.AddExtension = true;
save_file_dialog.CheckPathExists = true;
save_file_dialog.DereferenceLinks = true;
save_file_dialog.OverwritePrompt = true;
save_file_dialog.ValidateNames = true;
save_file_dialog.DefaultExt = "txt";
save_file_dialog.Filter = "Text files (*.txt)|*.zip|All files (*.*)|*.*";
save_file_dialog.FileName = "Qiqqa Citation Matrix.txt";
if (false == save_file_dialog.ShowDialog())
{
Logging.Info("User cancelled export of citation matrix.");
StatusManager.Instance.UpdateStatus("CitationMatrix", "Cancelled export of Citation Maxtrix");
return;
}
}
// Build the list of papers we want to list
StatusManager.Instance.UpdateStatusBusy("CitationMatrix", "Widening export set.");
HashSet <string> working_set_fingerprint = new HashSet <string>();
foreach (PDFDocument pdf_document in pdf_documents)
{
working_set_fingerprint.Add(pdf_document.Fingerprint);
if (export_inbound_citations)
{
foreach (var citation in pdf_document.PDFDocumentCitationManager.GetInboundCitations())
{
working_set_fingerprint.Add(citation.fingerprint_outbound);
}
}
if (export_outbound_citations)
{
foreach (var citation in pdf_document.PDFDocumentCitationManager.GetOutboundCitations())
{
working_set_fingerprint.Add(citation.fingerprint_inbound);
}
}
}
// The bibtex mapper
FingerprintToBibTeXMap map = new FingerprintToBibTeXMap(library);
// Build the result
StatusManager.Instance.UpdateStatusBusy("CitationMatrix", "Building Citation Matrix.");
DateTime start_time = DateTime.Now;
StringBuilder sb = new StringBuilder();
sb.AppendLine("------------------------------------------------------------------------");
sb.AppendLine("Cross citation report");
sb.AppendLine("------------------------------------------------------------------------");
sb.AppendLine(String.Format("Generated by Qiqqa ({0})", Common.Configuration.WebsiteAccess.Url_Documentation4Qiqqa));
sb.AppendLine(String.Format("On {0} {1}", start_time.ToLongDateString(), start_time.ToLongTimeString()));
sb.AppendLine("------------------------------------------------------------------------");
sb.AppendLine("Format is:");
sb.AppendLine(" source1,target1,target2,target3,");
sb.AppendLine(" source2,target1,target4,");
sb.AppendLine(" source3,target1,target3,target5,target6,");
sb.AppendLine("------------------------------------------------------------------------");
sb.AppendLine();
foreach (var fingerprint in working_set_fingerprint)
{
PDFDocument pdf_document = library.GetDocumentByFingerprint(fingerprint);
if (null != pdf_document)
{
List <Citation> citations = pdf_document.PDFDocumentCitationManager.GetOutboundCitations();
sb.AppendFormat("{0}", map.Map(pdf_document.Fingerprint, export_bibtex_keys));
sb.AppendFormat(",");
foreach (Citation citation in citations)
{
sb.AppendFormat("{0},", map.Map(citation.fingerprint_inbound, export_bibtex_keys));
}
sb.AppendFormat("\r\n");
}
else
{
Logging.Warn("While exporting cocitations, couldn't locate document {0} in library {1}.", fingerprint, library.WebLibraryDetail.Title);
}
}
StatusManager.Instance.UpdateStatusBusy("CitationMatrix", "Writing Citation Matrix.");
string target_filename = save_file_dialog.FileName;
File.WriteAllText(target_filename, sb.ToString());
StatusManager.Instance.UpdateStatus("CitationMatrix", "Exported Citation Maxtrix");
}
public PDFReadingControl OpenDocument(PDFDocument pdf_document, int?page, string search_terms, bool open_again)
{
if (pdf_document.IsVanillaReference)
{
var dialog = new AssociatePDFWithVanillaReferenceWindow(pdf_document);
dialog.ShowDialog();
return(null);
}
FeatureTrackingManager.Instance.UseFeature(
Features.Document_Open,
"DocumentFingerprint", pdf_document.Fingerprint,
"LibraryId", pdf_document.Library.WebLibraryDetail.Id
);
// If the document doesn't exist, check if it has a url bibtex field. If so, prompt to go there to find the doc
if (!File.Exists(pdf_document.DocumentPath))
{
string URL_FIELD = "url";
if (null != pdf_document.BibTexItem && pdf_document.BibTexItem.ContainsField(URL_FIELD))
{
if (MessageBoxes.AskQuestion("You do not have the PDF file associated with this document. However the document metadata has a URL link. Do you want to visit that web page to perhaps download it?"))
{
string url = pdf_document.BibTexItem[URL_FIELD];
Instance.OpenUrlInBrowser(url);
}
}
else
{
MessageBoxes.Info("You do not have the PDF file associated with this document. Perhaps you need to sync with your Web/Intranet Library to fetch it?");
}
return(null);
}
// Mark as recently read
pdf_document.Library.RecentlyReadManager.AddRecentlyRead(pdf_document);
// Add to most recently used
pdf_document.DateLastRead = DateTime.UtcNow;
pdf_document.Bindable.NotifyPropertyChanged(() => pdf_document.DateLastRead);
// Set the opening page, if necessary
if (page.HasValue)
{
pdf_document.PageLastRead = page.Value;
}
// Cause all pages to be OCRed
pdf_document.PDFRenderer.CauseAllPDFPagesToBeOCRed();
// Create a title for the window
string title = "PDF " + pdf_document.Fingerprint;
{
StringBuilder sb = new StringBuilder();
List <NameTools.Name> names = NameTools.SplitAuthors(pdf_document.AuthorsCombined, PDFDocument.UNKNOWN_AUTHORS);
if (0 < names.Count && names[0] != NameTools.Name.UNKNOWN_NAME)
{
sb.Append(names[0].last_name);
}
if (!String.IsNullOrEmpty(pdf_document.YearCombined))
{
sb.Append(pdf_document.YearCombined);
}
if (!String.IsNullOrEmpty(pdf_document.TitleCombined))
{
if (0 < sb.Length)
{
sb.Append(", ");
}
sb.Append(pdf_document.TitleCombined);
}
if (0 < sb.Length)
{
title = sb.ToString();
}
}
// Open the window
PDFReadingControl pdf_reading_control = null;
if (!open_again && main_window.DockingManager.Contains(pdf_document.UniqueId))
{
Logging.Info("Activating existing PDF viewer for '{0}' with fingerprint {1}", title, pdf_document.Fingerprint);
FrameworkElement fe = main_window.DockingManager.MakeActive(pdf_document.UniqueId);
pdf_reading_control = fe as PDFReadingControl;
}
else
{
Logging.Info("Opening new PDF viewer for {0}", title);
pdf_reading_control = new PDFReadingControl(pdf_document);
// Shall we colour the tab header?
Color?header_color = pdf_document.Color;
main_window.DockingManager.AddContent(pdf_document.UniqueId, title, Icons.GetAppIcon(Icons.ModulePDFViewer), true, true, pdf_reading_control, header_color);
}
// Select the current search terms
if (null != pdf_reading_control)
{
if (!String.IsNullOrEmpty(search_terms))
{
pdf_reading_control.SetSearchKeywords(search_terms);
}
if (page.HasValue)
{
pdf_reading_control.SelectPage(page.Value);
}
}
return(pdf_reading_control);
}