public double MakeComparison(Comparison comparison, ValueType typeOfValue)
{
double returnlog2ratio = 0;
List <double> outList = null;
if (typeOfValue == ValueType.MeanNormalizedFoldChange || typeOfValue == ValueType.MeanNormalizedLog2Change)
{
if (MeanNormValuesByGroup.TryGetValue(comparison.NumeratorGroupString, out outList))
{
double numeratorValue = MeanNormValuesByGroup[comparison.NumeratorGroupString].Average();
double denominatorValue = MeanNormValuesByGroup[comparison.DenominatorGroupString].Average();
double log2ratio = numeratorValue - denominatorValue;
returnlog2ratio = log2ratio;
}
}
else
{
outList = null;
if (Log2IntValuesByGroup.TryGetValue(comparison.NumeratorGroupString, out outList))
{
double numeratorValue = Log2IntValuesByGroup[comparison.NumeratorGroupString].Average();
double denominatorValue = Log2IntValuesByGroup[comparison.DenominatorGroupString].Average();
double log2ratio = numeratorValue - denominatorValue;
returnlog2ratio = log2ratio;
}
}
double realReturnvalue = 0;
if (typeOfValue == ValueType.IntensityFoldChange || typeOfValue == ValueType.MeanNormalizedFoldChange)
{
if (returnlog2ratio > 0)
{
realReturnvalue = Math.Pow(2, returnlog2ratio);
}
else
{
realReturnvalue = -1 / Math.Pow(2, returnlog2ratio);
}
}
else
{
realReturnvalue = returnlog2ratio;
}
ComparisonToPrintAverage.Add(comparison.ComparisonName, realReturnvalue);
return(realReturnvalue);
}
public void GroupQuantData()
{
foreach (KeyValuePair <string, double> kvp in CombinedMeanNormalizedSampleValues)
{
string groupNumber = UniqueHeaderToGroupString[kvp.Key];
List <double> outList = new List <double>();
if (MeanNormValuesByGroup.TryGetValue(groupNumber, out outList))
{
outList.Add(kvp.Value);
}
else
{
List <double> addList = new List <double>();
List <double> addAverageList = new List <double>();
addList.Add(kvp.Value);
addAverageList.Add(kvp.Value);
MeanNormValuesByGroup.Add(groupNumber, addList);
}
}
foreach (KeyValuePair <string, double> kvp in CombinedLog2NormalizedSampleValues)
{
string groupNumber = UniqueHeaderToGroupString[kvp.Key];
List <double> outList = new List <double>();
if (Log2IntValuesByGroup.TryGetValue(groupNumber, out outList))
{
outList.Add(kvp.Value);
}
else
{
List <double> addList = new List <double>();
addList.Add(kvp.Value);
Log2IntValuesByGroup.Add(groupNumber, addList);
}
}
}
