// Assign all points to nearest cluster
public void UpdatePointsByCentroid() // O(n*k)
{
// Clear points in the buckets, they will be re-inserted
foreach (var bucket in BucketsLookup.Values)
{
bucket.Points.Clear();
}
foreach (var p in this.points)
{
var minDist = Double.MaxValue;
var index = string.Empty;
foreach (var i in BucketsLookup.Keys)
{
var bucket = BucketsLookup[i];
if (bucket.IsUsed == false)
{
continue;
}
var centroid = bucket.Centroid;
var dist = MathTool.Distance(p, centroid);
if (dist < minDist)
{
// update
minDist = dist;
index = i;
}
}
// re-insert
var closestBucket = BucketsLookup[index];
closestBucket.Points.Add(p);
}
}
static double RunOneIteration() //O(k*n)
{
GlobalClass.program += "35. Runoneiteration .. ";
// update points, assign points to cluster
UpdatePointsByCentroid();
// update centroid pos by its points
BaseSetCentroidForAllBuckets(BaseBucketsLookup.Values);//O(k*n)
var clustersCount = BaseBucketsLookup.Count;
for (int i = 0; i < clustersCount; i++)
{
var currentBucket = BaseBucketsLookup[i.ToString()];
if (currentBucket.IsUsed == false)
{
continue;
}
//update centroid
var newcontroid = BaseGetCentroidFromCluster(currentBucket.Points);
//no need to update CGroup, autoset
currentBucket.Centroid = newcontroid;
currentBucket.ErrorLevel = 0;
//update error
foreach (var p in currentBucket.Points)
{
var dist = MathTool.Distance(newcontroid, p);
currentBucket.ErrorLevel += dist;
}
var val = currentBucket.ErrorLevel / currentBucket.Points.Count;
currentBucket.ErrorLevel = val; //Math.Sqrt(val);
}
Profile("RunOneIteration");
return(BaseGetTotalError());
}
public void DistanceTest(double x1, double y1, double x2, double y2)
{
Assert.AreEqual(x2.Hypot2(y2), MathTool.Distance(x1, y1, x2, y2), 0.000000001d);
var p1 = new PointF((float)x1, (float)y1);
var p2 = new PointF((float)x2, (float)y2);
Assert.AreEqual(x2.Hypot2(y2), p1.Distance(p2), 0.000000001d);
}
private static Segment MyClosestRec(List <XY> pointsByX)
{
int count = pointsByX.Count;
if (count <= 4)
{
return(Segment.Closest_BruteForce(pointsByX));
}
// left and right lists sorted by X, as order retained from full list
var leftByX = pointsByX.Take(count / 2).ToList();
var leftResult = MyClosestRec(leftByX);
var rightByX = pointsByX.Skip(count / 2).ToList();
var rightResult = MyClosestRec(rightByX);
var result = rightResult.Length() < leftResult.Length() ? rightResult : leftResult;
// There may be a shorter distance that crosses the divider
// Thus, extract all the points within result.Length either side
var mxid = leftByX.Last().X;
var bandWidth = result.Length();
var inBandByX = pointsByX.Where(p => Math.Abs(mxid - p.X) <= bandWidth);
// Sort by Y, so we can efficiently check for closer pairs
var inBandByY = inBandByX.OrderBy(p => p.Y).ToArray();
int iLast = inBandByY.Length - 1;
for (int i = 0; i < iLast; i++)
{
var pLower = inBandByY[i];
for (int j = i + 1; j <= iLast; j++)
{
var pUpper = inBandByY[j];
// Comparing each point to successivly increasing Y values
// Thus, can terminate as soon as deltaY is greater than best result
if ((pUpper.Y - pLower.Y) >= result.Length())
{
break;
}
if (MathTool.Distance(pLower, pUpper) < result.Length())
{
result = new Segment(pLower, pUpper);
}
}
}
return(result);
}
void MergeClustersGridHelper(string currentKey, string[] neighborKeys)
{
GlobalClass.program += "41. GridBaseCluster.MergeClustersGridHelper .. ";
double minDistX = DeltaX / 2.0;//heuristic, higher value gives less merging
double minDistY = DeltaY / 2.0;
//if clusters in grid are too close to each other, merge them
double minDist = MathTool.Max(minDistX, minDistY);
foreach (var neighborKey in neighborKeys)
{
if (!BaseBucketsLookup.ContainsKey(neighborKey))
{
continue;
}
var neighbor = BaseBucketsLookup[neighborKey];
if (neighbor.IsUsed == false)
{
continue;
}
var current = BaseBucketsLookup[currentKey];
var dist = MathTool.Distance(current.Centroid, neighbor.Centroid);
if (dist > minDist)
{
continue;
}
var centroidgroup = current.Centroid.CGroup;
foreach (var p in neighbor.Points)
{
//update CGroup
p.CGroup = centroidgroup;
}//end
neighP = neighbor.Points.ToArray();
current.Points.AddRange(neighbor.Points);//O(n)
// recalc centroid
var cp = BaseGetCentroidFromCluster(current.Points);
current.Centroid = cp;
neighbor.IsUsed = false; //merged, then not used anymore
}
}
void MergeClustersGridHelper(string currentKey, string[] neighborKeys)
{
double minDistX = DeltaX / 2.0; //heuristic, higher value gives less merging
double minDistY = DeltaY / 2.0;
//if clusters in grid are too close to each other, merge them
double minDist = MathTool.Max(minDistX, minDistY);
foreach (var neighborKey in neighborKeys)
{
if (!BaseBucketsLookup.ContainsKey(neighborKey))
{
continue;
}
var neighbor = BaseBucketsLookup[neighborKey];
if (neighbor.IsUsed == false)
{
continue;
}
var current = BaseBucketsLookup[currentKey];
var dist = MathTool.Distance(current.Centroid, neighbor.Centroid);
if (dist > minDist)
{
continue;
}
// merge
var color = current.Centroid.Color;
foreach (var p in neighbor.Points)
{
//update color
p.Color = color;
}
current.Points.AddRange(neighbor.Points); //O(n)
// recalc centroid
var cp = BaseGetCentroidFromCluster(current.Points);
current.Centroid = cp;
neighbor.IsUsed = false; //merged, then not used anymore
neighbor.Points.Clear(); //clear mem
}
}
public MapPoint GetClosestPoint(MapPoint from, List <MapPoint> list) // O(n)
{
var min = double.MaxValue;
MapPoint closests = null;
foreach (var p in list)
{
var dist = MathTool.Distance(from, p);
if (dist >= min)
{
continue;
}
// update
min = dist;
closests = p;
}
return(closests);
}
public XY BaseGetLongestPoint(XY from, List <XY> list) //O(n)
{
double max = -double.MaxValue;
XY longest = null;
foreach (var p in list)
{
var d = MathTool.Distance(from, p);
if (d <= max)
{
continue;
}
// update
max = d;
longest = p;
}
return(longest);
}
public static XY BaseGetClosestPoint(XY from, List <XY> list) //O(n)
{
double min = double.MaxValue;
XY closests = null;
foreach (var p in list)
{
var d = MathTool.Distance(from, p);
if (d >= min)
{
continue;
}
// update
min = d;
closests = p;
}
return(closests);
}
public IP GetClosestPoint(IP from, IPoints list) // O(n)
{
var min = double.MaxValue;
IP closests = null;
foreach (var p in list.Data)
{
var d = MathTool.Distance(from, p);
if (d >= min)
{
continue;
}
// update
min = d;
closests = p;
}
return(closests);
}
public static XY BaseGetLongestPoint(XY from, List <XY> list) //O(n)
{
GlobalClass.program += "27. BaseClusternewKmeans.BaeGetLongestPoint .. ";
double max = -double.MaxValue;
XY longest = null;
foreach (var p in list)
{
var d = MathTool.Distance(from, p);
if (d <= max)
{
continue;
}
// update
max = d;
longest = p;
}
return(longest);
}
public static XY BaseGetClosestPoint(XY from, List <XY> list) //O(n)
{
GlobalClass.program += "26. BaseClusternewKmeans.BaseGetClosestPoint .. ";
double min = double.MaxValue;
XY closests = null;
foreach (var p in list)
{
var d = MathTool.Distance(from, p);
if (d >= min)
{
continue;
}
// update
min = d;
closests = p;
}
return(closests);
}
static void UpdatePointsByCentroid()//O(n*k)
{
GlobalClass.program += "36. Updatepointsbycentroid.. ";
int count = BaseBucketsLookup.Count();
// clear points in the buckets, they will be re-inserted
foreach (var bucket in BaseBucketsLookup.Values)
{
bucket.Points.Clear();
}
foreach (XY p in BaseDataset)
{
double minDist = Double.MaxValue;
int index = -1;
for (int i = 0; i < count; i++)
{
var bucket = BaseBucketsLookup[i.ToString()];
if (bucket.IsUsed == false)
{
continue;
}
var centroid = bucket.Centroid;
var dist = MathTool.Distance(p, centroid);
if (dist < minDist)
{
// update
minDist = dist;
index = i;
}
}
//update CGroup for point to match centroid and re-insert
var closestBucket = BaseBucketsLookup[index.ToString()];
p.CGroup = closestBucket.Centroid.CGroup;
closestBucket.Points.Add(p);
}
Profile("UpdatePointsByCentroid");
}
// assign all points to nearest cluster
public void BaseUpdatePointsByCentroid() //O(n*k)
{
Profile("UpdatePointsByCentroid beg");
int count = BaseBucketsLookup.Count();
// clear points in the buckets, they will be re-inserted
foreach (var bucket in BaseBucketsLookup.Values)
{
bucket.Points.Clear();
}
foreach (XY p in BaseDataset)
{
double minDist = Double.MaxValue;
string index = string.Empty;
//for (int i = 0; i < count; i++)
foreach (var i in BaseBucketsLookup.Keys)
{
var bucket = BaseBucketsLookup[i];
if (bucket.IsUsed == false)
{
continue;
}
var centroid = bucket.Centroid;
var dist = MathTool.Distance(p, centroid);
if (dist < minDist)
{
// update
minDist = dist;
index = i;
}
}
//update color for point to match centroid and re-insert
var closestBucket = BaseBucketsLookup[index];
p.Color = closestBucket.Centroid.Color;
closestBucket.Points.Add(p);
}
}
void MergeClustersGridHelper(string currentKey, IEnumerable <string> neighborKeys)
{
double minDistX = DeltaX / GmcSettings.Get.MergeWithin;
double minDistY = DeltaY / GmcSettings.Get.MergeWithin;
// If clusters in grid are too close to each other, merge them
double withinDist = Math.Max(minDistX, minDistY);
foreach (var neighborKey in neighborKeys)
{
if (!BucketsLookup.ContainsKey(neighborKey))
{
continue;
}
var neighbor = BucketsLookup[neighborKey];
if (neighbor.IsUsed == false)
{
continue;
}
var current = BucketsLookup[currentKey];
var dist = MathTool.Distance(current.Centroid, neighbor.Centroid);
if (dist > withinDist)
{
continue;
}
current.Points.AddRange(neighbor.Points); //O(n)
// recalc centroid
var centroidPoint = GetCentroidFromClusterLatLon(current.Points);
current.Centroid = centroidPoint;
neighbor.IsUsed = false; // merged, then not used anymore
neighbor.Points.Clear(); // clear mem
}
}
public void DistanceTest()
{
Assert.AreEqual(5, MathTool.Distance(0, 0, 3, 4, 1));
}