public Chromatogram(ManagedDataSource source, int index, ChromatogramList chromatogramList)
{
this.source = source;
this.chromatogramList = chromatogramList;
this.index = index;
//element = chromatogram;
id = Element.id;
//index = element.index;
}
public MassSpectrum(ManagedDataSource source, int index, SpectrumList spectrumList)
{
this.source = source;
this.spectrumList = spectrumList;
this.index = index;
//element = spectrum;
//using( Spectrum element = Element )
{
id = Element.id;
}
}
public MassSpectrum(ManagedDataSource source, int index, SpectrumList spectrumList)
{
this.source = source;
this.spectrumList = spectrumList;
this.index = index;
//element = spectrum;
//using( Spectrum element = Element )
{
id = Element.id;
AbbreviatedId = pwiz.CLI.msdata.id.abbreviate(id);
}
}
public HeatmapForm(Manager manager, ManagedDataSource source)
{
InitializeComponent();
this.manager = manager;
this.source = source;
heatmapGraphPaneByMsLevel = new List <HeatMapGraphPane>();
ticChromatogramByMsLevel = new List <ChromatogramControl>();
heatmapBoundsByMsLevel = new List <BoundingBox>();
ionMobilityBinsByMsLevelAndScanTime = new List <Map <double, List <MobilityBin> > >();
msGraphControl.BorderStyle = BorderStyle.None;
msGraphControl.MasterPane.InnerPaneGap = 1;
msGraphControl.MouseDownEvent += msGraphControl_MouseDownEvent;
msGraphControl.MouseUpEvent += msGraphControl_MouseUpEvent;
msGraphControl.MouseMoveEvent += msGraphControl_MouseMoveEvent;
msGraphControl.ZoomButtons = MouseButtons.Left;
msGraphControl.ZoomModifierKeys = Keys.None;
msGraphControl.ZoomButtons2 = MouseButtons.None;
msGraphControl.UnzoomButtons = new MSGraphControl.MouseButtonClicks(MouseButtons.Middle);
msGraphControl.UnzoomModifierKeys = Keys.None;
msGraphControl.UnzoomButtons2 = new MSGraphControl.MouseButtonClicks(MouseButtons.None);
msGraphControl.UnzoomAllButtons = new MSGraphControl.MouseButtonClicks(MouseButtons.Left, 2);
msGraphControl.UnzoomAllButtons2 = new MSGraphControl.MouseButtonClicks(MouseButtons.None);
msGraphControl.PanButtons = MouseButtons.Left;
msGraphControl.PanModifierKeys = Keys.Control;
msGraphControl.PanButtons2 = MouseButtons.None;
msGraphControl.ZoomEvent += msGraphControl_ZoomEvent;
msGraphControl.IsEnableVZoom = msGraphControl.IsEnableVPan = true;
Text = TabText = source.Source.Name + " Heatmaps";
ContextMenuStrip dummyMenu = new ContextMenuStrip();
dummyMenu.Opening += foo_Opening;
TabPageContextMenuStrip = dummyMenu;
}
public ChromatogramControl(ManagedDataSource source, int targetMsLevel, GraphPane graphPane)
{
Title = String.Format("TIC Chromatogram (ms{0})", targetMsLevel);
var dgv = source.SpectrumListForm.GridView;
var scanTimeColumn = dgv.Columns["ScanTime"];
var ticColumn = dgv.Columns["TotalIonCurrent"];
var msLevelColumn = dgv.Columns["MsLevel"];
var ionMobilityColumn = dgv.Columns["IonMobility"];
var dataPointsColumn = dgv.Columns["DataPoints"];
IntensityByScanTime = new SortedList <double, double>(dgv.RowCount / 200);
for (int i = 0; i < dgv.RowCount; ++i)
{
int msLevel = (int)dgv[msLevelColumn.Index, i].Value;
if (targetMsLevel != msLevel || (double)dgv[ionMobilityColumn.Index, i].Value == 0 || Convert.ToInt32(dgv[dataPointsColumn.Index, i].Value) == 0)
{
continue;
}
double scanTime = (double)dgv[scanTimeColumn.Index, i].Value;
double intensity = (double)dgv[ticColumn.Index, i].Value;
if (!IntensityByScanTime.ContainsKey(scanTime))
{
IntensityByScanTime[scanTime] = intensity;
}
else
{
IntensityByScanTime[scanTime] += intensity;
}
}
Points = new PointPairList(IntensityByScanTime.Keys, IntensityByScanTime.Values);
Source = source;
MsLevel = targetMsLevel;
GraphPane = graphPane;
SelectedTime = 0;
}
/// <summary>
/// This function checks the exisiting cache for the data source.
/// It will create a new one, inserts it into the cache before
/// returning it.
/// </summary>
/// <param name="name">Name of the datasource</param>
/// <returns>SeeMS ManagedDataSource</returns>
public static ManagedDataSource getDataSource(string name)
{
try {
ManagedDataSource src = (ManagedDataSource) cache[name];
if(src == null)
{
src = new ManagedDataSource(new SpectrumSource(name));
cache[name] = src;
}
return src;
} catch(Exception e)
{
MessageBox.Show(e.ToString() + "\n" + e.StackTrace);
}
return null;
}
