public void addKeggDetails(string v)
{
if (!Dict_kegg_details.ContainsKey(v))
{
Dict_kegg_details.Add(v, new KEGG_entry_details(v));
if (Dict_kegg_details[v].metadata)
{
foreach (pathway p in Dict_kegg_details[v].listOfPathway)
{
if (!List_of_pathways.Any(x => x.Kegg_map_id == p.Kegg_map_id))
{
List_of_pathways.Add(p);
}
}
}
}
}
public string printLine()
{
return(string.Format("{1}{0}{2}{0}{3}{0}{4}{0}{5}{0}{6}{0}{7}{0}{8}{0}{9}{0}{10}{0}{11}{0}{12}{0}{13}{0}{14}{0}{15}{0}{16}{0}{17}{0}{18}{0}{19}{0}{20}{0}{21}" +
"{0}{22}{0}{23}{0}{24}{0}{25}{0}{26}{0}{27}{0}{28}{0}{29}{0}{30}{0}{31}{0}{32}{0}{33}{0}{34}{0}{35}{0}{36}{0}{37}{0}{38}{0}{39}{0}{40}{0}{41}{0}{42}{0}{43}{0}{44}{0}{45}{0}{46}{0}{47}{0}{48}{0}{49}{0}{50}{0}{51}" +
"{0}{52}{0}{53}{0}{54}{0}{55}{0}{56}{0}{57}{0}{58}{0}{59}{0}{60}",
'\t',
Hmdb_accession,
(Hmdb_secondary_accessions == null ? "" : string.Join("|", Hmdb_secondary_accessions)),
Name,
(Synonym_names == null ? "" : string.Join("|", Synonym_names)),
Description,
Formula,
Average_molecular_weight,
Monisotopic_molecular_weight,
Iupac_name,
Traditional_iupac,
Cas_registry_number,
(Cts_cas == null ? "" : string.Join("|", Cts_cas)),
Smiles,
Inchi,
Inchikey,
(My_taxonomy == null ? "" : My_taxonomy.Direct_parent),
(My_taxonomy == null ? "" : My_taxonomy.Kingdom),
(My_taxonomy == null ? "" : My_taxonomy.Super_class),
(My_taxonomy == null ? "" : My_taxonomy.Tclass),
(My_taxonomy == null ? "" : string.Join("|", My_taxonomy.Substituents)),
(My_taxonomy == null ? "" : string.Join("|", My_taxonomy.Other_descriptors)),
(My_onotology == null ? "" : My_onotology.Status),
(My_onotology == null ? "" : string.Join("|", My_onotology.Origins)),
(My_onotology == null ? "" : string.Join("|", My_onotology.Biofunctions)),
(My_onotology == null ? "" : string.Join("|", My_onotology.Applications)),
(My_onotology == null ? "" : string.Join("|", My_onotology.Cellular_locations)),
State,
(Biofluid_locations == null ? "" : string.Join("|", Biofluid_locations)),
(Tissue_locations == null ? "" : string.Join("|", Tissue_locations)),
(List_of_pathways == null ? "" : string.Join("|", List_of_pathways.Select(x => x.Kegg_map_id))),
(List_of_pathways == null ? "" : string.Join("|", List_of_pathways.Select(x => string.Join(",", x.List_of_names)))),
(List_of_pathways == null ? "" : string.Join("|", List_of_pathways.Select(x => x.Super_class))),
(List_of_pathways == null ? "" : string.Join("|", List_of_pathways.Select(x => x.Pathway_map.Item1 + "-" + x.Pathway_map.Item2))),
(List_of_pathways == null ? "" : string.Join("|", List_of_pathways.Select(x => string.Join(",", x.List_of_modules.Select(y => y.Item1 + "-" + y.Item2))))),
(List_of_pathways == null ? "" : string.Join("|", List_of_pathways.Select(x => string.Join(",", x.List_of_diseases.Select(y => y.Item1 + "-" + y.Item2))))),
(List_of_pathways == null ? "" : string.Join("|", List_of_pathways.Select(x => x.Organism))),
(List_of_pathways == null ? "" : string.Join("|", List_of_pathways.Select(x => x.Gene))),
(List_of_pathways == null ? "" : string.Join("|", List_of_pathways.Select(x => x.Enzyme))),
(List_of_pathways == null ? "" : string.Join("|", List_of_pathways.Select(x => x.Reaction))),
(List_of_pathways == null ? "" : string.Join("|", List_of_pathways.Select(x => x.Compound))),
(List_of_pathways == null ? "" : string.Join("|", List_of_pathways.Select(x => x.Ko_pathway))),
(List_of_pathways == null ? "" : string.Join("|", List_of_pathways.Select(x => x.Rel_pathway))),
(List_of_pathways == null ? "" : string.Join("|", List_of_pathways.Select(x => x.Smpdb_map_id))),
(List_of_pathways == null ? "" : string.Join("|", List_of_pathways.Select(x => x.Smpdb_map_name))),
(List_of_pathways == null ? "" : string.Join("|", List_of_pathways.Select(x => x.Smpadb_map_description))),
Drugbank_id,
Drugbank_metabolite_id,
Chemspider_id,
Kegg_id,
(Cts_kegg == null ? "" : string.Join("|", Cts_kegg)),
Metlin_id,
Pubchem_compound_id,
Chebi_id,
(Cts_chebi == null ? "" : string.Join("|", Cts_chebi)),
Synthesis_reference,
(List_of_proteins == null ? "" : string.Join("|", List_of_proteins.Select(x => x.Protein_accession))),
(List_of_proteins == null ? "" : string.Join("|", List_of_proteins.Select(x => x.Name))),
(List_of_proteins == null ? "" : string.Join("|", List_of_proteins.Select(x => x.Uniprot_id))),
(List_of_proteins == null ? "" : string.Join("|", List_of_proteins.Select(x => x.Gene_name))),
(List_of_proteins == null ? "" : string.Join("|", List_of_proteins.Select(x => x.Protein_type)))));
}
