public async Task ReactionProcessing_ValidRnx_GenerateExpectedRecordNode()
{
var recordResponse = await JohnApi.GetNodesById(FileId);
var recordNodes = JsonConvert.DeserializeObject <JArray>(await recordResponse.Content.ReadAsStringAsync());
var recordId = recordNodes.First()["id"].ToObject <Guid>();
recordId.Should().NotBeEmpty();
recordId.Should().Should().BeOfType <GuidAssertions>();
var recordNodeResponse = await JohnApi.GetNodeById(recordId);
var recordNode = JsonConvert.DeserializeObject <JObject>(await recordNodeResponse.Content.ReadAsStringAsync());
recordNode.Should().ContainsJson($@"
{{
'id': '{recordId}',
'type': 'Record',
'subType': 'Reaction',
'name': 0,
'blob': {{
'bucket': '{JohnId}'
}},
'ownedBy': '{JohnId}',
'createdBy': '{JohnId}',
'createdDateTime': '{DateTime.UtcNow}',
'updatedBy': '{JohnId}',
'updatedDateTime': '{DateTime.UtcNow}',
'parentId': '{FileId}',
'version': *EXIST*,
'status': '{FileStatus.Processed}',
}}" );
recordNode["images"].Should().NotBeNull();
recordNode["images"].Should().HaveCount(1);
}
public async Task ChemicalProcessing_InvalidMol_GenerateExpectedInvalidRecordNode()
{
var recordResponse = await JohnApi.GetNodesById(FileId);
var recordNodes = JsonConvert.DeserializeObject <JArray>(await recordResponse.Content.ReadAsStringAsync());
var recordId = recordNodes.First()["id"].ToObject <Guid>();
recordId.Should().NotBeEmpty();
var recordNodeResponse = await JohnApi.GetNodeById(recordId);
var recordNode = JsonConvert.DeserializeObject <JObject>(await recordNodeResponse.Content.ReadAsStringAsync());
recordNode.Should().NotBeEmpty();
recordNode.Should().ContainsJson($@"
{{
'id': '{recordId}',
'type': 'Record',
'subType': 'Structure',
'ownedBy':'{JohnId}',
'createdBy':'{JohnId}',
'createdDateTime': '{DateTime.UtcNow}',
'updatedBy':'{JohnId}',
'updatedDateTime': '{DateTime.UtcNow}',
'parentId': '{FileId}',
'version': *EXIST*,
'status': '{FileStatus.Failed}'
}}" );
}
public async Task ChemicalProcessing_InvalidMol_GenerateExpectedInvalidRecordEntity()
{
var recordResponse = await JohnApi.GetNodesById(FileId);
var recordNodes = JsonConvert.DeserializeObject <JArray>(await recordResponse.Content.ReadAsStringAsync());
var recordId = recordNodes.First()["id"].ToObject <Guid>();
recordId.Should().NotBeEmpty();
var recordEntityResponse = await JohnApi.GetRecordEntityById(recordId);
var recordEntity = JsonConvert.DeserializeObject <JObject>(await recordEntityResponse.Content.ReadAsStringAsync());
recordEntity.Should().NotBeEmpty();
recordEntity.Should().ContainsJson($@"
{{
'id': '{recordId}',
'type': 'Structure',
'fileId': '{FileId}',
'ownedBy': '{JohnId}',
'createdBy': '{JohnId}',
'createdDateTime': '{DateTime.UtcNow}',
'updatedBy': '{JohnId}',
'updatedDateTime': '{DateTime.UtcNow}',
'index': 0,
'status': '{FileStatus.Failed}',
'message': 'molfile loader: ring bond count is allowed only for queries',
'version': *EXIST*
}}" );
}
public async Task ReactionProcessing_ValidRnx_GenerateExpectedRecordNodeOnlyOne()
{
var recordResponse = await JohnApi.GetNodesById(FileId);
var recordNodes = JsonConvert.DeserializeObject <JArray>(await recordResponse.Content.ReadAsStringAsync());
recordNodes.Should().HaveCount(1);
}
public async Task ReactionProcessing_InvalidRnx_GenerateExpectedRecoedNodesOnlyEmpty()
{
var recordResponse = await JohnApi.GetNodesById(FileId);
var recordNodes = JsonConvert.DeserializeObject <JArray>(await recordResponse.Content.ReadAsStringAsync());
recordNodes.Should().BeNullOrEmpty();
}
public async Task MSWordUpload_ValidDoc_GenerateExpectedRecordNodesOnlyEmpty()
{
var recordResponse = await JohnApi.GetNodesById(FileId);
var recordNodes = JsonConvert.DeserializeObject <JArray>(await recordResponse.Content.ReadAsStringAsync());
recordNodes.Should().HaveCount(0);
}
public async Task SpectraProcessing_InvalidJdx_GenerateExpectedRecordNodeOnlyEmpty()
{
var recordResponse = await JohnApi.GetNodesById(FileId);
var recordNodes = JsonConvert.DeserializeObject <JArray>(await recordResponse.Content.ReadAsStringAsync());
recordNodes.Should().HaveCount(0);
}
public async Task ChemicalProcessing_ValidMol_GenerateExpectedRecordEntity()
{
var recordResponse = await JohnApi.GetNodesById(FileId);
var recordNodes = JsonConvert.DeserializeObject <JArray>(await recordResponse.Content.ReadAsStringAsync());
var recordId = recordNodes.First()["id"].ToObject <Guid>();
recordId.Should().NotBeEmpty();
var recordEntityResponse = await JohnApi.GetRecordEntityById(recordId);
var recordEntity = JsonConvert.DeserializeObject <JObject>(await recordEntityResponse.Content.ReadAsStringAsync());
recordEntity.Should().NotBeEmpty();
recordEntity.Should().ContainsJson($@"
{{
'id': '{recordId}',
'type': 'Structure',
'fileId': '{FileId}',
'blob': {{
'bucket': '{JohnId}',
}},
'ownedBy': '{JohnId}',
'createdBy': '{JohnId}',
'createdDateTime': '{DateTime.UtcNow}',
'updatedBy': '{JohnId}',
'updatedDateTime': '{DateTime.UtcNow}',
'index': 0,
'status': '{FileStatus.Processed}',
'version': *EXIST*,
'properties': {{
'fields': [
{{
'name': 'StdInChI',
'value': 'InChI=1S/C9H8O4/c1-6(10)13-8-5-3-2-4-7(8)9(11)12/h2-5H,1H3,(H,11,12)'
}},
{{
'name': 'StdInChIKey',
'value': 'BSYNRYMUTXBXSQ-UHFFFAOYSA-N'
}},
{{
'name': 'SMILES',
'value': 'CC(OC1=C(C(=O)O)C=CC=C1)=O'
}}
],
'chemicalProperties': *EXIST*
}}
}}" );
recordEntity["images"].Should().NotBeNull();
recordEntity["images"].Should().HaveCount(1);
}
public async Task CrystalProcessing_ValidMol_GenerateExpectedRecordEntity()
{
var recordResponse = await JohnApi.GetNodesById(FileId);
var recordNodes = JsonConvert.DeserializeObject <JArray>(await recordResponse.Content.ReadAsStringAsync());
var recordId = recordNodes.First()["id"].ToObject <Guid>();
recordId.Should().NotBeEmpty();
var recordEntityResponse = await JohnApi.GetRecordEntityById(recordId);
var recordEntity = JsonConvert.DeserializeObject <JObject>(await recordEntityResponse.Content.ReadAsStringAsync());
recordEntity.Should().NotBeEmpty();
recordEntity.Should().ContainsJson($@"
{{
'id': '{recordId}',
'type': 'Crystal',
'fileId': '{FileId}',
'blob': {{
'bucket': '{JohnId}',
}},
'ownedBy': '{JohnId}',
'createdBy': '{JohnId}',
'createdDateTime': '{DateTime.UtcNow}',
'updatedBy': '{JohnId}',
'updatedDateTime': '{DateTime.UtcNow}',
'index': 0,
'status': '{FileStatus.Processed}',
'version': *EXIST*,
'properties': {{
'fields': [
{{
'name': 'Field1',
'value': 'Value1'
}},
{{
'name': 'Field2',
'value': 'Value2'
}}
]
}}
}}" );
recordEntity["images"].Should().NotBeNull();
recordEntity["images"].Should().HaveCount(3);
}
public async Task FileSharing_WithUnauthorizeUser_ReturnsExpectedNotFoundRecordNode()
{
var recordResponse = await JohnApi.GetNodesById(FileId);
var recordNodes = JsonConvert.DeserializeObject <JArray>(await recordResponse.Content.ReadAsStringAsync());
var recordId = recordNodes.First()["id"].ToObject <Guid>();
recordId.Should().NotBeEmpty();
var response = await UnauthorizedApi.GetNodeById(recordId);
response.IsSuccessStatusCode.Should().Be(false);
// response.StatusCode.ShouldBeEquivalentTo(HttpStatusCode.NotFound);
// response.ReasonPhrase.ShouldAllBeEquivalentTo("Not Found");
}
public async Task ChemicalProcessing_ValidCdx_GenerateExpectedRecordNode()
{
var recordResponse = await JohnApi.GetNodesById(FileId);
var recordNodes = JsonConvert.DeserializeObject <JArray>(await recordResponse.Content.ReadAsStringAsync());
recordNodes.Should().HaveCount(3);
foreach (var recordNodeCurrent in recordNodes)
{
var recordId = recordNodeCurrent["id"].ToObject <Guid>();
recordId.Should().NotBeEmpty();
await ValidRecordEntity(recordId);
await ValidRecordNode(recordId);
}
}
public async Task BlobImageRecordSharing_WithUnauthorizeUser_ReturnsExpectedNotFound()
{
var nodeRecordResponse = await JohnApi.GetNodesById(FileId);
var nodeRecord = JArray.Parse(await nodeRecordResponse.Content.ReadAsStringAsync()).First();
var nodeRecordId = nodeRecord["id"].ToObject <Guid>();
var recordResponse = await JohnApi.GetRecordEntityById(nodeRecordId);
var record = JObject.Parse(await recordResponse.Content.ReadAsStringAsync());
var recordId = record["id"].ToObject <Guid>();
var imageId = record["images"].First()["id"].ToObject <Guid>();
var response = await UnauthorizedApi.GetImagesRecordEntityById(recordId, imageId);
response.IsSuccessStatusCode.Should().Be(false);
// response.StatusCode.ShouldBeEquivalentTo(HttpStatusCode.NotFound);
// response.ReasonPhrase.ShouldAllBeEquivalentTo("Not Found");
}
public async Task FileSharin_WithAuthorizeUser_ReturnsExpectedBlobRecord()
{
var nodeRecordResponse = await JohnApi.GetNodesById(FileId);
var nodeRecord = JArray.Parse(await nodeRecordResponse.Content.ReadAsStringAsync()).First();
var nodeRecordId = nodeRecord["id"].ToObject <Guid>();
var recordResponse = await JohnApi.GetRecordEntityById(nodeRecordId);
var record = JObject.Parse(await recordResponse.Content.ReadAsStringAsync());
var recordId = record["id"].ToObject <Guid>();
var recordBlobId = record["blob"]["id"].ToObject <Guid>();
var blobResponse = await JohnApi.GetBlobRecordEntityById(recordId, recordBlobId);
blobResponse.EnsureSuccessStatusCode();
blobResponse.StatusCode.ShouldBeEquivalentTo(HttpStatusCode.OK);
blobResponse.Content.Headers.ContentType.MediaType.ShouldBeEquivalentTo("chemical/x-mdl-molfile");
blobResponse.Content.Headers.ContentLength.ShouldBeEquivalentTo(1689);
//blobResponse.Content.Headers.ContentDisposition.FileName.Should().NotBeNullOrEmpty();
}
public async Task FileSharing_WithAuthorizeUser_ReturnsExpectedImageRecord()
{
var nodeRecordResponse = await JohnApi.GetNodesById(FileId);
var nodeRecord = JArray.Parse(await nodeRecordResponse.Content.ReadAsStringAsync()).First();
var nodeRecordId = nodeRecord["id"].ToObject <Guid>();
var recordResponse = await JohnApi.GetRecordEntityById(nodeRecordId);
var record = JObject.Parse(await recordResponse.Content.ReadAsStringAsync());
var recordId = record["id"].ToObject <Guid>();
var imageId = record["images"].First()["id"].ToObject <Guid>();
var blobResponse = await JohnApi.GetImagesRecordEntityById(recordId, imageId);
blobResponse.EnsureSuccessStatusCode();
blobResponse.StatusCode.ShouldBeEquivalentTo(HttpStatusCode.OK);
blobResponse.Content.Headers.ContentType.MediaType.ShouldBeEquivalentTo("application/octet-stream");
blobResponse.Content.Headers.ContentLength.Should().BeGreaterThan(10000);
blobResponse.Content.Headers.ContentDisposition.FileName.ShouldBeEquivalentTo("Aspirin.mol.svg");
}
public async Task FileSharing_WithAuthorizeUser_ReturnsExpectedBlobFileAndRecord()
{
var nodeRecordResponse = await JohnApi.GetNodesById(FileId);
var nodeRecord = JArray.Parse(await nodeRecordResponse.Content.ReadAsStringAsync()).First();
var nodeRecordId = nodeRecord["id"].ToObject <Guid>();
var recordResponse = await JohnApi.GetRecordEntityById(nodeRecordId);
var record = JObject.Parse(await recordResponse.Content.ReadAsStringAsync());
var recordId = record["id"].ToObject <Guid>();
var recordBlobId = record["blob"]["id"].ToObject <Guid>();
var blobRecordResponse = await JohnApi.GetBlobRecordEntityById(recordId, recordBlobId);
var recordString = await blobRecordResponse.Content.ReadAsStringAsync();
var blobFileResponse = await UnauthorizedApi.GetBlobFileEntityById(FileId, BlobId);
var fileString = await blobFileResponse.Content.ReadAsStringAsync();
recordString.Should().BeEquivalentTo(fileString);
}
public async Task ChemicalProcessing_InvalidSdf_GenerateExpectedRecordNodeAndRecordEntity()
{
var recordResponse = await JohnApi.GetNodesById(FileId);
var recordNodes = JsonConvert.DeserializeObject <JArray>(await recordResponse.Content.ReadAsStringAsync());
recordNodes.Should().HaveCount(5);
var recordNodesIndex = 0;
var listStatus = new List <FileStatus> {
FileStatus.Failed, FileStatus.Processed
};
//var listType = new List<string> { "InvalidRecord", "Record" };
foreach (var recordNodesItem in recordNodes)
{
var recordId = recordNodesItem["id"].ToObject <Guid>();
recordId.Should().NotBeEmpty();
var recordEntityResponse = await JohnApi.GetRecordEntityById(recordId);
var recordEntity = JsonConvert.DeserializeObject <JObject>(await recordEntityResponse.Content.ReadAsStringAsync());
recordEntity.Should().NotBeEmpty();
recordEntity.Should().ContainsJson($@"
{{
'id': '{recordId}',
'type': 'Structure',
'fileId': '{FileId}',
'ownedBy': '{JohnId}',
'createdBy': '{JohnId}',
'createdDateTime': *EXIST*,
'updatedBy': '{JohnId}',
'updatedDateTime': *EXIST*,
'index': {recordNodesIndex},
'status': '{listStatus[recordNodesIndex]}',
'version': *EXIST*
}}" );
var recordNodeResponse = await JohnApi.GetNodeById(recordId);
var recordNode = JsonConvert.DeserializeObject <JObject>(await recordNodeResponse.Content.ReadAsStringAsync());
recordNode.Should().NotBeEmpty();
recordNode.Should().ContainsJson($@"
{{
'id': '{recordId}',
'type': 'Record',
'subType': 'Structure',
'ownedBy': '{JohnId}',
'createdBy': '{JohnId}',
'createdDateTime': *EXIST*,
'updatedBy': '{JohnId}',
'updatedDateTime': *EXIST*,
'parentId': '{FileId}',
'version': *EXIST*,
'status': '{listStatus[recordNodesIndex]}'
}}" );
recordNodesIndex++;
}
}
public async Task ChemicalProcessing_ValidMol_GenerateExpectedRecordEntity()
{
var recordResponse = await JohnApi.GetNodesById(FileId);
var recordNodes = JsonConvert.DeserializeObject <JArray>(await recordResponse.Content.ReadAsStringAsync());
var recordId = recordNodes.First()["id"].ToObject <Guid>();
recordId.Should().NotBeEmpty();
var recordEntityResponse = await JohnApi.GetRecordEntityById(recordId);
var recordEntity = JsonConvert.DeserializeObject <JObject>(await recordEntityResponse.Content.ReadAsStringAsync());
recordEntity.Should().NotBeEmpty();
recordEntity.Should().ContainsJson($@"
{{
'id': '{recordId}',
'type': 'Structure',
'fileId': '{FileId}',
'blob': {{
'bucket': '{JohnId}',
}},
'ownedBy': '{JohnId}',
'createdBy': '{JohnId}',
'createdDateTime': '{DateTime.UtcNow}',
'updatedBy': '{JohnId}',
'updatedDateTime': '{DateTime.UtcNow}',
'index': 0,
'status': '{FileStatus.Processed}',
'version': *EXIST*,
'properties': {{
'fields': [
{{
'name': 'StdInChI',
'value': 'InChI=1S/C9H8O4/c1-6(10)13-8-5-3-2-4-7(8)9(11)12/h2-5H,1H3,(H,11,12)'
}},
{{
'name': 'StdInChIKey',
'value': 'BSYNRYMUTXBXSQ-UHFFFAOYSA-N'
}},
{{
'name': 'SMILES',
'value': 'CC(OC1=C(C(=O)O)C=CC=C1)=O'
}},
{{
'name': 'AuxInfo',
'value': '1/1/N:1,8,7,9,6,2,10,5,11,3,12,13,4/E:(11,12)/rA:13nCCOOCCCCCCCOO/rB:s1;d2;s2;s4;s5;d6;s7;d8;d5s9;s10;s11;d11;/rC:5.982,-4.6062,0;5.318,-3.4576,0;5.982,-2.3031,0;3.99,-3.4576,0;3.326,-2.3031,0;3.99,-1.1545,0;3.326,0,0;1.992,0,0;1.328,-1.1545,0;1.992,-2.3031,0;1.328,-3.4576,0;0,-3.4576,0;1.992,-4.6062,0;'
}},
{{
'name': 'Formula',
'value': 'C9 H8 O4'
}},
{{
'name': 'Mw',
'value': '180.1574'
}},
{{
'name': 'CSID',
'value': '2157'
}}
],
'chemicalProperties': *EXIST*
}}
}}" );
recordEntity["images"].Should().NotBeNull();
recordEntity["images"].Should().HaveCount(1);
}
