public Matrix BuildMassTransportConductivityMatrix()
{
int numDofs = Nodes.Count;
var convection = Matrix.CreateZero(numDofs, numDofs);
IReadOnlyList <double[]> shapeFunctions =
Interpolation.EvaluateFunctionsAtGaussPoints(QuadratureForStiffness);
IReadOnlyList <Matrix> shapeGradientsNatural =
Interpolation.EvaluateNaturalGradientsAtGaussPoints(QuadratureForStiffness);
for (int gp = 0; gp < QuadratureForStiffness.IntegrationPoints.Count; ++gp)
{
var jacobian = new IsoparametricJacobian3D(Nodes, shapeGradientsNatural[gp]);
Vector shapeFunctionMatrix = BuildShapeFunctionMatrix(shapeFunctions[gp]);
Matrix shapeGradientsCartesian =
jacobian.TransformNaturalDerivativesToCartesian(shapeGradientsNatural[gp]);
Matrix deformation = BuildDeformationMatrix(shapeGradientsCartesian);
Vector deformationX = deformation.GetRow(0);
Vector deformationY = deformation.GetRow(1);
Vector deformationZ = deformation.GetRow(2);
Matrix partialK = shapeFunctionMatrix.TensorProduct(deformationX) * material.ConvectionCoeff[0] +
shapeFunctionMatrix.TensorProduct(deformationY) * material.ConvectionCoeff[1] +
shapeFunctionMatrix.TensorProduct(deformationZ) * material.ConvectionCoeff[2];
double dA = jacobian.DirectDeterminant * QuadratureForStiffness.IntegrationPoints[gp].Weight;
convection.AxpyIntoThis(partialK, dA);
}
//WARNING: the following needs to change for non uniform density. Perhaps the integration order too.
//convection.Scale(1);
return(convection);
}
public Matrix BuildDiffusionConductivityMatrix()
{
int numDofs = Nodes.Count;
var conductivity = Matrix.CreateZero(numDofs, numDofs);
IReadOnlyList <Matrix> shapeGradientsNatural =
Interpolation.EvaluateNaturalGradientsAtGaussPoints(QuadratureForStiffness);
for (int gp = 0; gp < QuadratureForStiffness.IntegrationPoints.Count; ++gp)
{
// Calculate the necessary quantities for the integration
var jacobian = new IsoparametricJacobian3D(Nodes, shapeGradientsNatural[gp]);
Matrix shapeGradientsCartesian =
jacobian.TransformNaturalDerivativesToCartesian(shapeGradientsNatural[gp]);
Matrix deformation = BuildDeformationMatrix(shapeGradientsCartesian);
// Contribution of this gauss point to the element stiffness matrix
Matrix partialK = deformation.Transpose() * deformation;
//Matrix partialΚ = deformation.Transpose() * (constitutive * deformation);
//partialK.Scale(materialsAtGaussPoints[gaussPoint].ThermalConductivity);
double dA = jacobian.DirectDeterminant * QuadratureForStiffness.IntegrationPoints[gp].Weight; //TODO: this is used by all methods that integrate. I should cache it.
conductivity.AxpyIntoThis(partialK, dA * material.DiffusionCoeff);
//conductivity.AxpyIntoThis(partialK, dA * 1);
}
//conductivity.Scale(1);
return(conductivity);
}
public IReadOnlyList <Matrix> BuildSecondSpaceDerivativeMatrix()
{
int numDofs = Nodes.Count;
var secondDerivativeMatrix = new List <Matrix>();
for (int i = 0; i < 3; i++)
{
secondDerivativeMatrix.Add(Matrix.CreateZero(numDofs, numDofs));
}
IReadOnlyList <Matrix> shapeGradientsNatural =
Interpolation.EvaluateNaturalGradientsAtGaussPoints(QuadratureForStiffness);
for (int gp = 0; gp < QuadratureForStiffness.IntegrationPoints.Count; ++gp)
{
var jacobian = new IsoparametricJacobian3D(Nodes, shapeGradientsNatural[gp]);
Matrix shapeGradientsCartesian =
jacobian.TransformNaturalDerivativesToCartesian(shapeGradientsNatural[gp]);
Matrix deformation = BuildDeformationMatrix(shapeGradientsCartesian);
Vector deformationX = deformation.GetRow(0);
Vector deformationY = deformation.GetRow(1);
Vector deformationZ = deformation.GetRow(2);
Matrix partialKX = deformationX.TensorProduct(deformationX);
Matrix partialKY = deformationY.TensorProduct(deformationY);
Matrix partialKZ = deformationZ.TensorProduct(deformationZ);
double dA = jacobian.DirectDeterminant * QuadratureForStiffness.IntegrationPoints[gp].Weight;
secondDerivativeMatrix[0].AxpyIntoThis(partialKX, -dA);
secondDerivativeMatrix[1].AxpyIntoThis(partialKY, -dA);
secondDerivativeMatrix[2].AxpyIntoThis(partialKZ, -dA);
}
//WARNING: the following needs to change for non uniform density. Perhaps the integration order too.
//convection.Scale(1);
return(secondDerivativeMatrix);
}
public IReadOnlyList <Matrix> BuildFirstSpaceDerivativeMatrix()
{
int numDofs = Nodes.Count;
var firstDerivativeMatrix = new List <Matrix>();
for (int i = 0; i < 3; i++)
{
firstDerivativeMatrix.Add(Matrix.CreateZero(numDofs, numDofs));
}
IReadOnlyList <double[]> shapeFunctions =
Interpolation.EvaluateFunctionsAtGaussPoints(QuadratureForStiffness);
IReadOnlyList <Matrix> shapeGradientsNatural =
Interpolation.EvaluateNaturalGradientsAtGaussPoints(QuadratureForStiffness);
for (int gp = 0; gp < QuadratureForStiffness.IntegrationPoints.Count; ++gp)
{
Vector shapeFunctionMatrix = BuildShapeFunctionMatrix(shapeFunctions[gp]);
var jacobian = new IsoparametricJacobian3D(Nodes, shapeGradientsNatural[gp]);
Matrix shapeGradientsCartesian =
jacobian.TransformNaturalDerivativesToCartesian(shapeGradientsNatural[gp]);
Matrix deformation = BuildDeformationMatrix(shapeGradientsCartesian);
Vector deformationX = deformation.GetRow(0);
Vector deformationY = deformation.GetRow(1);
Vector deformationZ = deformation.GetRow(2);
Matrix partialKX = shapeFunctionMatrix.TensorProduct(deformationX);
Matrix partialKY = shapeFunctionMatrix.TensorProduct(deformationY);
Matrix partialKZ = shapeFunctionMatrix.TensorProduct(deformationZ);
double dA = jacobian.DirectDeterminant * QuadratureForStiffness.IntegrationPoints[gp].Weight;
firstDerivativeMatrix[0].AxpyIntoThis(partialKX, -dA);
firstDerivativeMatrix[1].AxpyIntoThis(partialKY, -dA);
firstDerivativeMatrix[2].AxpyIntoThis(partialKZ, -dA);
}
return(firstDerivativeMatrix);
}
public Table <INode, IDofType, double> CalculateStabilizingBodyLoad(IIsoparametricInterpolation3D interpolation, IQuadrature3D integration, IReadOnlyList <Node> nodes)
{
var loadTable = new Table <INode, IDofType, double>();
IReadOnlyList <Matrix> shapeGradientsNatural =
interpolation.EvaluateNaturalGradientsAtGaussPoints(integration);
IReadOnlyList <double[]> shapeFunctionNatural =
interpolation.EvaluateFunctionsAtGaussPoints(integration);
for (int gp = 0; gp < integration.IntegrationPoints.Count; gp++)
{
var jacobian = new IsoparametricJacobian3D(nodes, shapeGradientsNatural[gp]);
Matrix shapeGradientsCartesian =
jacobian.TransformNaturalDerivativesToCartesian(shapeGradientsNatural[gp]);
//TODO: isn't this just the transpose of [dNi/dxj]?
var deformation = Matrix.CreateZero(3, nodes.Count);
for (int nodeIdx = 0; nodeIdx < nodes.Count; ++nodeIdx)
{
deformation[0, nodeIdx] = shapeGradientsCartesian[nodeIdx, 0];
deformation[1, nodeIdx] = shapeGradientsCartesian[nodeIdx, 1];
deformation[2, nodeIdx] = shapeGradientsCartesian[nodeIdx, 2];
}
Vector deformationX = deformation.GetRow(0);
Vector deformationY = deformation.GetRow(1);
Vector deformationZ = deformation.GetRow(2);
Vector partialK = deformationX.Scale(_material.ConvectionCoeff[0]) +
deformationY.Scale(_material.ConvectionCoeff[1]) +
deformationZ.Scale(_material.ConvectionCoeff[2]);
//loadTable.AxpyIntoThis(partialK, dA);
var weightFactor = integration.IntegrationPoints[gp].Weight;
for (int indexNode = 0; indexNode < nodes.Count; indexNode++)
{
var node = nodes[indexNode];
var valueX = -0.5 * _load * partialK[indexNode] * jacobian.DirectDeterminant *
weightFactor;
if (loadTable.Contains(node, _dofType))
{
loadTable[node, _dofType] += valueX;
}
else
{
loadTable.TryAdd(node, _dofType, valueX);
}
}
}
return(loadTable);
}
public Tuple <double[], double[]> CalculateStresses(IElement element, double[] localDisplacements,
double[] localdDisplacements)
{
int numberOfDofs = 3 * Nodes.Count;
var Forces = Vector.CreateZero(numberOfDofs);
IReadOnlyList <Matrix> shapeGradientsNatural =
Interpolation.EvaluateNaturalGradientsAtGaussPoints(QuadratureForStiffness);
//double[] strains = new double[6];
//for (int gp = 0; gp < QuadratureForStiffness.IntegrationPoints.Count; ++gp)
//{
// strains = new double[6];
// var jacobian = new IsoparametricJacobian3D(Nodes, shapeGradientsNatural[gp]);
// Matrix shapeGradientsCartesian =
// jacobian.TransformNaturalDerivativesToCartesian(shapeGradientsNatural[gp]);
// Matrix deformation = BuildDeformationMatrix(shapeGradientsCartesian);
// strains = deformation.Multiply(localDisplacements);
// materialsAtGaussPoints[gp].UpdateMaterial(strains);
//}
//double[] strains = new double[6];
double[] strainsVecMinusLastConvergedValue = new double[6];
for (int gpo = 0; gpo < QuadratureForStiffness.IntegrationPoints.Count; ++gpo)
{
//strainsVec[gpo] = new double[6];
var jacobian = new IsoparametricJacobian3D(Nodes, shapeGradientsNatural[gpo]);
Matrix shapeGradientsCartesian =
jacobian.TransformNaturalDerivativesToCartesian(shapeGradientsNatural[gpo]);
Matrix deformation = BuildDeformationMatrix(shapeGradientsCartesian);
strainsVec[gpo] = deformation.Multiply(localDisplacements);
strainsVecMinusLastConvergedValue = new double[6]
{
strainsVec[gpo][0] - strainsVecLastConverged[gpo][0],
strainsVec[gpo][1] - strainsVecLastConverged[gpo][1],
strainsVec[gpo][2] - strainsVecLastConverged[gpo][2],
strainsVec[gpo][3] - strainsVecLastConverged[gpo][3],
strainsVec[gpo][4] - strainsVecLastConverged[gpo][4],
strainsVec[gpo][5] - strainsVecLastConverged[gpo][5]
};
materialsAtGaussPoints[gpo].UpdateMaterial(strainsVecMinusLastConvergedValue);
//To update with total strain simplY = materialsAtGaussPoints[npoint].UpdateMaterial(strainsVec[npoint]);
}
return(new Tuple <double[], double[]>(strainsVec[materialsAtGaussPoints.Count - 1], materialsAtGaussPoints[materialsAtGaussPoints.Count - 1].Stresses));
}
public EvalInterpolation3D(IReadOnlyList <Node> elementNodes, double[] shapeFunctions, Matrix shapeGradientsNatural,
IsoparametricJacobian3D jacobian)
{
int numNodes = elementNodes.Count;
#if DEBUG
if ((shapeFunctions.Length != numNodes) || (shapeGradientsNatural.NumRows != numNodes))
{
throw new ArgumentException($"There are {numNodes} nodes, but {ShapeFunctions.Length} shape functions"
+ $" and {shapeGradientsNatural.NumRows} natural shape derivatives.");
}
#endif
this.elementNodes = elementNodes;
this.ShapeFunctions = shapeFunctions;
this.ShapeGradientsNatural = shapeGradientsNatural;
this.Jacobian = jacobian;
this.ShapeGradientsCartesian = jacobian.TransformNaturalDerivativesToCartesian(shapeGradientsNatural);
}
public double[] CalculateForces(IElement element, double[] localTotalDisplacements, double[] localDisplacements)
{
int numberOfDofs = 3 * Nodes.Count;
var Forces = Vector.CreateZero(numberOfDofs);
IReadOnlyList <Matrix> shapeGradientsNatural =
Interpolation.EvaluateNaturalGradientsAtGaussPoints(QuadratureForStiffness);
for (int gp = 0; gp < QuadratureForStiffness.IntegrationPoints.Count; ++gp)
{
Vector Stresses = Vector.CreateFromArray(materialsAtGaussPoints[gp].Stresses);
var jacobian = new IsoparametricJacobian3D(Nodes, shapeGradientsNatural[gp]);
Matrix shapeGradientsCartesian =
jacobian.TransformNaturalDerivativesToCartesian(shapeGradientsNatural[gp]);
Matrix deformation = BuildDeformationMatrix(shapeGradientsCartesian);
Vector gpForces = deformation.Transpose() * (Stresses);
double dA = jacobian.DirectDeterminant * QuadratureForStiffness.IntegrationPoints[gp].Weight;
gpForces.ScaleIntoThis(dA);
Forces.AddIntoThis(gpForces);
}
return(Forces.CopyToArray());
}
UpdateStrainStressesAtGaussPoints(double[] localDisplacements)
{
int numberOfGPs = QuadratureForStiffness.IntegrationPoints.Count;
var strains = new double[numberOfGPs][];
var stresses = new double[numberOfGPs][];
IReadOnlyList <Matrix> shapeGradientsNatural =
Interpolation.EvaluateNaturalGradientsAtGaussPoints(QuadratureForStiffness);
for (int gp = 0; gp < numberOfGPs; gp++)
{
IMatrixView constitutive = materialsAtGaussPoints[gp].ConstitutiveMatrix;
var jacobian = new IsoparametricJacobian3D(Nodes, shapeGradientsNatural[gp]);
Matrix shapeGrandientsCartesian =
jacobian.TransformNaturalDerivativesToCartesian(shapeGradientsNatural[gp]);
Matrix deformation = BuildDeformationMatrix(shapeGrandientsCartesian);
strains[gp] = deformation.Multiply(localDisplacements);
stresses[gp] = constitutive.Multiply(strains[gp]);
}
return(strains, stresses);
}
public IMatrix BuildStiffnessMatrix()
{
int numberOfDofs = 3 * Nodes.Count;
var stiffness = Matrix.CreateZero(numberOfDofs, numberOfDofs);
IReadOnlyList <Matrix> shapeGradientsNatural =
Interpolation.EvaluateNaturalGradientsAtGaussPoints(QuadratureForStiffness);
for (int gp = 0; gp < QuadratureForStiffness.IntegrationPoints.Count; ++gp)
{
IMatrixView constitutive = materialsAtGaussPoints[gp].ConstitutiveMatrix;
var jacobian = new IsoparametricJacobian3D(Nodes, shapeGradientsNatural[gp]);
Matrix shapeGradientsCartesian =
jacobian.TransformNaturalDerivativesToCartesian(shapeGradientsNatural[gp]);
Matrix deformation = BuildDeformationMatrix(shapeGradientsCartesian);
Matrix partial = deformation.ThisTransposeTimesOtherTimesThis(constitutive);
double dA = jacobian.DirectDeterminant * QuadratureForStiffness.IntegrationPoints[gp].Weight;
stiffness.AxpyIntoThis(partial, dA);
}
return(DofEnumerator.GetTransformedMatrix(stiffness));
}