public IEnumerable <string> GetAnnotation(IVariant variant)
{
var overlappingSvs =
_intervalForest.GetAllOverlappingIntervals(variant.Chromosome.Index, variant.Start, variant.End);
if (overlappingSvs == null)
{
return(null);
}
var jsonStrings = new List <string>();
foreach (var interval in overlappingSvs)
{
var(reciprocalOverlap, annotationOverlap) = SuppIntervalUtilities.GetOverlapFractions(
new ChromosomeInterval(variant.Chromosome, interval.Begin, interval.End), variant);
jsonStrings.Add(AddOverlapToAnnotation(interval.Value, reciprocalOverlap, annotationOverlap));
}
return(jsonStrings);
}
