Пример #1
0
        /// <summary>
        /// Generates the forcefield, given the topology.
        /// </summary>
        /// <param name="parentTopology">The topology to spawn the forcefield into.</param>
        /// <param name="properties">Properties of the system.</param>
        /// <param name="reporter">Reporter to print output to.</param>
        /// <returns></returns>
        public IForceField GenerateForceField(InstantiatedTopology parentTopology, SystemProperties properties, IReporter reporter)
        {
            //TODO do any extra stuff thats needed.
            var forcefield = new QMLForceField(modelPath, pythonHome, reporter);

            reporter.PrintEmphasized("Successfully initialised QML forcefield.");
            return(forcefield);
        }
Пример #2
0
 /// <summary>
 /// Add this forcefield to the instantiated topology.
 /// </summary>
 /// <param name="parentTopology">The topology.</param>
 /// <param name="residue">The atom group this forcefield is associated with.</param>
 /// <param name="context">The spawn context this forcefield is associated with.</param>
 public void AddToTopology(InstantiatedTopology parentTopology, IResidue residue, ref SpawnContext context)
 {
     //TODO generalize this to multiple templates/atom groups.
     parentTopology.ForceFieldTerms.Add(this);
 }