public void Update(ITableNGlycanProxy glycan, ITableNGlycanProxy source)
{
if (glycan is ITableNGlycanMassProxy && source is ITableNGlycanMassProxy)
{
(glycan as ITableNGlycanMassProxy).AddRangeMass((source as ITableNGlycanMassProxy).GetMass());
(glycan as ITableNGlycanMassProxy).AddCoreRangeMass((source as ITableNGlycanMassProxy).GetCoreMass());
}
else
{
throw new InvalidCastException("Proxy can not cast to MassProxy");
}
}
public List <IGlycan> Create()
{
Queue <ITableNGlycanProxy> queue = new Queue <ITableNGlycanProxy>();
Dictionary <string, ITableNGlycanProxy> visited = new Dictionary <string, ITableNGlycanProxy>();
queue.Enqueue(root);
List <IGlycan> glycans = new List <IGlycan>();
while (queue.Count > 0)
{
ITableNGlycanProxy node = queue.Dequeue();
foreach (MonosaccharideType suger in Enum.GetValues(typeof(MonosaccharideType)))
{
List <ITableNGlycan> neighbors = node.Growth(suger);
foreach (ITableNGlycan n in neighbors)
{
string id = n.GetName();
try
{
if (generator.Criteria(n))
{
if (!visited.ContainsKey(id))
{
ITableNGlycanProxy proxy = generator.Generate(n);
queue.Enqueue(proxy);
visited.Add(id, proxy);
glycans.Add(proxy);
}
generator.Update(visited[id], node);
}
}
catch (Exception e)
{
Console.WriteLine("Exception occurs at " + id);
Console.WriteLine(e.Message);
}
}
}
}
return(glycans);
}
public GeneralTableNGlycanCreator(ITableNGlycanProxyGenerator generator, ITableNGlycanProxy glycan)
{
this.generator = generator;
root = glycan;
}
