public override void CalculateImpactAndReplacementValues(ISymbolicDataAnalysisModel model, ISymbolicExpressionTreeNode node,
IDataAnalysisProblemData problemData, IEnumerable<int> rows, out double impactValue, out double replacementValue, out double newQualityForImpactsCalculation,
double qualityForImpactsCalculation = Double.NaN) {
var classificationModel = (ISymbolicClassificationModel)model;
var classificationProblemData = (IClassificationProblemData)problemData;
if (double.IsNaN(qualityForImpactsCalculation))
qualityForImpactsCalculation = CalculateQualityForImpacts(classificationModel, classificationProblemData, rows);
replacementValue = CalculateReplacementValue(classificationModel, node, classificationProblemData, rows);
var constantNode = new ConstantTreeNode(new Constant()) { Value = replacementValue };
var cloner = new Cloner();
var tempModel = cloner.Clone(classificationModel);
var tempModelNode = (ISymbolicExpressionTreeNode)cloner.GetClone(node);
var tempModelParentNode = tempModelNode.Parent;
int i = tempModelParentNode.IndexOfSubtree(tempModelNode);
tempModelParentNode.RemoveSubtree(i);
tempModelParentNode.InsertSubtree(i, constantNode);
OnlineCalculatorError errorState;
var dataset = classificationProblemData.Dataset;
var targetClassValues = dataset.GetDoubleValues(classificationProblemData.TargetVariable, rows);
var estimatedClassValues = tempModel.GetEstimatedClassValues(dataset, rows);
newQualityForImpactsCalculation = OnlineAccuracyCalculator.Calculate(targetClassValues, estimatedClassValues, out errorState);
if (errorState != OnlineCalculatorError.None) newQualityForImpactsCalculation = 0.0;
impactValue = qualityForImpactsCalculation - newQualityForImpactsCalculation;
}
private string FormatRecursively(ISymbolicExpressionTreeNode node, int indentLength, ref int nodeId) {
// save id of current node
int currentNodeId = nodeId;
// increment id for next node
nodeId++;
StringBuilder strBuilder = new StringBuilder();
if (Indent) strBuilder.Append(' ', indentLength);
// get label for node and map if necessary
string nodeLabel = node.ToString();
if (symbolNameMap.ContainsKey(nodeLabel)) {
nodeLabel = symbolNameMap[nodeLabel];
}
strBuilder.Append("node" + currentNodeId + "[label=\"" + nodeLabel + "\"");
// leaf nodes should have box shape
if (node.SubtreeCount == 0) {
strBuilder.AppendLine(", shape=\"box\"];");
} else {
strBuilder.AppendLine("];");
}
// internal nodes or leaf nodes?
foreach (ISymbolicExpressionTreeNode subTree in node.Subtrees) {
// add an edge
if (Indent) strBuilder.Append(' ', indentLength);
strBuilder.AppendLine("node" + currentNodeId + " -- node" + nodeId + ";");
// format the whole subtree
strBuilder.Append(FormatRecursively(subTree, indentLength + 2, ref nodeId));
}
return strBuilder.ToString();
}
public static void Create(IRandom random, ISymbolicExpressionTreeNode seedNode, int maxDepth) {
// make sure it is possible to create a trees smaller than maxDepth
if (seedNode.Grammar.GetMinimumExpressionDepth(seedNode.Symbol) > maxDepth)
throw new ArgumentException("Cannot create trees of depth " + maxDepth + " or smaller because of grammar constraints.", "maxDepth");
var arity = SampleArity(random, seedNode);
// throw an exception if the seedNode happens to be a terminal, since in this case we cannot grow a tree
if (arity <= 0)
throw new ArgumentException("Cannot grow tree. Seed node shouldn't have arity zero.");
var allowedSymbols = seedNode.Grammar.AllowedSymbols.Where(s => s.InitialFrequency > 0.0).ToList();
for (var i = 0; i < arity; i++) {
var possibleSymbols = allowedSymbols.Where(s => seedNode.Grammar.IsAllowedChildSymbol(seedNode.Symbol, s, i)).ToList();
var weights = possibleSymbols.Select(s => s.InitialFrequency).ToList();
#pragma warning disable 612, 618
var selectedSymbol = possibleSymbols.SelectRandom(weights, random);
#pragma warning restore 612, 618
var tree = selectedSymbol.CreateTreeNode();
if (tree.HasLocalParameters) tree.ResetLocalParameters(random);
seedNode.AddSubtree(tree);
}
// Only iterate over the non-terminal nodes (those which have arity > 0)
// Start from depth 2 since the first two levels are formed by the rootNode and the seedNode
foreach (var subTree in seedNode.Subtrees)
if (subTree.Grammar.GetMaximumSubtreeCount(subTree.Symbol) > 0)
RecursiveCreate(random, subTree, 2, maxDepth);
}
/// <summary>
/// Genotype-to-Phenotype mapper (iterative breath-first approach, by using a queue -> FIFO).
/// </summary>
/// <param name="startNode">first node of the tree with arity 1</param>
/// <param name="genotype">integer vector, which should be mapped to a tree</param>
/// <param name="grammar">grammar to determine the allowed child symbols for each node</param>
/// <param name="maxSubtreeCount">maximum allowed subtrees (= number of used genomes)</param>
/// <param name="random">random number generator</param>
private void MapBreathFirstIteratively(ISymbolicExpressionTreeNode startNode,
IntegerVector genotype,
ISymbolicExpressionGrammar grammar,
int maxSubtreeCount, IRandom random) {
Queue<Tuple<ISymbolicExpressionTreeNode, int>> queue
= new Queue<Tuple<ISymbolicExpressionTreeNode, int>>(); // tuples of <node, arity>
int genotypeIndex = 0;
queue.Enqueue(new Tuple<ISymbolicExpressionTreeNode, int>(startNode, 1));
while (queue.Count > 0) {
Tuple<ISymbolicExpressionTreeNode, int> current = queue.Dequeue();
// foreach subtree of the current node, create a new node and enqueue it, if it is no terminal node
for (int i = 0; i < current.Item2; ++i) {
if (genotypeIndex >= maxSubtreeCount) {
// if all genomes were used, only add terminal nodes to the remaining subtrees
current.Item1.AddSubtree(GetRandomTerminalNode(current.Item1, grammar, random));
} else {
var newNode = GetNewChildNode(current.Item1, genotype, grammar, genotypeIndex, random);
int arity = SampleArity(random, newNode, grammar);
current.Item1.AddSubtree(newNode);
genotypeIndex++;
if (arity > 0) {
// new node has subtrees so enqueue the node
queue.Enqueue(new Tuple<ISymbolicExpressionTreeNode, int>(newNode, arity));
}
}
}
}
}
private void FormatRecursively(ISymbolicExpressionTreeNode node, StringBuilder strBuilder) {
// TODO: adapt to interpreter semantics. The HL interpreter also allows Boolean operations on reals
if (node.Subtrees.Any()) {
if (node.Symbol is Addition) {
FormatOperator(node, "+", strBuilder);
} else if (node.Symbol is And) {
FormatOperator(node, "&&", strBuilder);
} else if (node.Symbol is Average) {
FormatFunction(node, "Average", strBuilder);
} else if (node.Symbol is Cosine) {
FormatFunction(node, "Math.Cos", strBuilder);
} else if (node.Symbol is Division) {
FormatDivision(node, strBuilder);
} else if (node.Symbol is Exponential) {
FormatFunction(node, "Math.Exp", strBuilder);
} else if (node.Symbol is GreaterThan) {
FormatOperator(node, ">", strBuilder);
} else if (node.Symbol is IfThenElse) {
FormatFunction(node, "EvaluateIf", strBuilder);
} else if (node.Symbol is LessThan) {
FormatOperator(node, "<", strBuilder);
} else if (node.Symbol is Logarithm) {
FormatFunction(node, "Math.Log", strBuilder);
} else if (node.Symbol is Multiplication) {
FormatOperator(node, "*", strBuilder);
} else if (node.Symbol is Not) {
FormatOperator(node, "!", strBuilder);
} else if (node.Symbol is Or) {
FormatOperator(node, "||", strBuilder);
} else if (node.Symbol is Xor) {
FormatOperator(node, "^", strBuilder);
} else if (node.Symbol is Sine) {
FormatFunction(node, "Math.Sin", strBuilder);
} else if (node.Symbol is Subtraction) {
FormatSubtraction(node, strBuilder);
} else if (node.Symbol is Tangent) {
FormatFunction(node, "Math.Tan", strBuilder);
} else if (node.Symbol is Square) {
FormatSquare(node, strBuilder);
} else if (node.Symbol is SquareRoot) {
FormatFunction(node, "Math.Sqrt", strBuilder);
} else if (node.Symbol is Power) {
FormatFunction(node, "Math.Pow", strBuilder);
} else if (node.Symbol is Root) {
FormatRoot(node, strBuilder);
} else {
throw new NotSupportedException("Formatting of symbol: " + node.Symbol + " not supported for C# symbolic expression tree formatter.");
}
} else {
if (node is VariableTreeNode) {
var varNode = node as VariableTreeNode;
strBuilder.AppendFormat("{0} * {1}", varNode.VariableName, varNode.Weight.ToString("g17", CultureInfo.InvariantCulture));
} else if (node is ConstantTreeNode) {
var constNode = node as ConstantTreeNode;
strBuilder.Append(constNode.Value.ToString("g17", CultureInfo.InvariantCulture));
} else {
throw new NotSupportedException("Formatting of symbol: " + node.Symbol + " not supported for C# symbolic expression tree formatter.");
}
}
}
public string FormatOnlyExpression(ISymbolicExpressionTreeNode expressionNode) {
var stringBuilder = new StringBuilder();
stringBuilder.AppendLine(" for " + CurrentIndexVariable + " = 1:1:rows");
stringBuilder.AppendLine(" estimated(" + CurrentIndexVariable + ") = " + FormatRecursively(expressionNode.GetSubtree(0)) + ";");
stringBuilder.AppendLine(" end;");
return stringBuilder.ToString();
}
private static string FormatRecursively(ISymbolicExpressionTreeNode node) {
StringBuilder strBuilder = new StringBuilder();
if (node.Subtrees.Count() > 0) {
// node
var symbol = node.Symbol as CFGSymbol;
if (symbol != null) {
var partsEnumerator = symbol.GetTerminalParts().GetEnumerator();
var subtreeEnumerator = node.Subtrees.GetEnumerator();
while (partsEnumerator.MoveNext() && subtreeEnumerator.MoveNext()) {
strBuilder.Append(partsEnumerator.Current);
strBuilder.Append(FormatRecursively(subtreeEnumerator.Current));
}
strBuilder.Append(partsEnumerator.Current);
} else {
// ProgramRoot or StartSymbol
foreach (var subtree in node.Subtrees) {
strBuilder.Append(FormatRecursively(subtree));
}
}
} else {
// leaf
var symbol = node.Symbol as CFGSymbol;
if (symbol != null) {
var parts = symbol.GetTerminalParts();
strBuilder.Append(parts.First());
}
}
return strBuilder.ToString();
}
public static void RenderNode(TextWriter writer, ISymbolicExpressionTreeNode node, string prefix) {
string label = node.ToString();
writer.Write(label);
if (node.SubtreeCount > 0) {
var padding = prefix + new string(' ', label.Length);
for (int i = 0; i != node.SubtreeCount; ++i) {
char connector, extender = ' ';
if (i == 0) {
if (node.SubtreeCount > 1) {
connector = RenderChars.JunctionDown;
extender = RenderChars.VerticalLine;
} else {
connector = RenderChars.HorizontalLine;
extender = ' ';
}
} else {
writer.Write(padding);
if (i == node.SubtreeCount - 1) {
connector = RenderChars.CornerRight;
extender = ' ';
} else {
connector = RenderChars.JunctionRight;
extender = RenderChars.VerticalLine;
}
}
writer.Write(string.Concat(connector, RenderChars.HorizontalLine));
var newPrefix = string.Concat(padding, extender, ' ');
RenderNode(writer, node.GetSubtree(i), newPrefix);
}
} else
writer.WriteLine();
}
private string FormatRecursively(ISymbolicExpressionTreeNode node, int indentLength) {
StringBuilder strBuilder = new StringBuilder();
if (Indent) strBuilder.Append(' ', indentLength);
if (node.Subtrees.Count() > 0) { // internal node
strBuilder.Append("(");
if (node.Symbol is Addition) {
strBuilder.AppendLine("+");
} else if (node.Symbol is And) {
strBuilder.AppendLine("&&");
} else if (node.Symbol is Average) {
strBuilder.AppendLine("avg");
} else if (node.Symbol is Cosine) {
strBuilder.AppendLine("cos");
} else if (node.Symbol is Division) {
strBuilder.AppendLine("/");
} else if (node.Symbol is Exponential) {
strBuilder.AppendLine("exp");
} else if (node.Symbol is GreaterThan) {
strBuilder.AppendLine(">");
} else if (node.Symbol is IfThenElse) {
strBuilder.AppendLine("if");
} else if (node.Symbol is LessThan) {
strBuilder.AppendLine("<");
} else if (node.Symbol is Logarithm) {
strBuilder.AppendLine("ln");
} else if (node.Symbol is Multiplication) {
strBuilder.AppendLine("*");
} else if (node.Symbol is Not) {
strBuilder.AppendLine("!");
} else if (node.Symbol is Or) {
strBuilder.AppendLine("||");
} else if (node.Symbol is Sine) {
strBuilder.AppendLine("sin");
} else if (node.Symbol is Subtraction) {
strBuilder.AppendLine("-");
} else if (node.Symbol is Tangent) {
strBuilder.AppendLine("tan");
} else {
throw new NotSupportedException("Formatting of symbol: " + node.Symbol + " not supported for external evaluation.");
}
// each subtree expression on a new line
// and closing ')' also on new line
foreach (var subtree in node.Subtrees) {
strBuilder.AppendLine(FormatRecursively(subtree, indentLength + 2));
}
if (Indent) strBuilder.Append(' ', indentLength);
strBuilder.Append(")");
} else {
if (node is VariableTreeNode) {
var varNode = node as VariableTreeNode;
strBuilder.AppendFormat("(* {0} {1})", varNode.VariableName, varNode.Weight.ToString("g17", CultureInfo.InvariantCulture));
} else if (node is ConstantTreeNode) {
var constNode = node as ConstantTreeNode;
strBuilder.Append(constNode.Value.ToString("g17", CultureInfo.InvariantCulture));
} else {
throw new NotSupportedException("Formatting of symbol: " + node.Symbol + " not supported for external evaluation.");
}
}
return strBuilder.ToString();
}
public static int CompareNodes(ISymbolicExpressionTreeNode a, ISymbolicExpressionTreeNode b) {
var ta = a as SymbolicExpressionTreeTerminalNode;
var tb = b as SymbolicExpressionTreeTerminalNode;
if (ta == null)
return tb == null ? String.CompareOrdinal(a.Symbol.Name, b.Symbol.Name) : -1;
if (tb == null)
return 1;
// at this point we know a and b are both terminals
var va = a as VariableTreeNode;
var vb = b as VariableTreeNode;
if (va != null)
return vb == null ? -1 : CompareVariables(va, vb);
if (vb != null)
return 1;
// at this point we know a and b are not variables
var ca = a as ConstantTreeNode;
var cb = b as ConstantTreeNode;
if (ca != null && cb != null)
return ca.Value.CompareTo(cb.Value);
// for other unknown terminal types, compare strings
return string.CompareOrdinal(a.ToString(), b.ToString());
}
public VariableNodeEditDialog(ISymbolicExpressionTreeNode node) {
InitializeComponent();
oldValueTextBox.TabStop = false; // cannot receive focus using tab key
NewNode = (VariableTreeNode)node; // will throw an invalid cast exception if node is not of the correct type
InitializeFields();
}
public static IEnumerable<ISymbolicExpressionTreeNode> FindMatches(ISymbolicExpressionTreeNode root, ISymbolicExpressionTreeNode subtree, SymbolicExpressionTreeNodeEqualityComparer comp) {
var fragmentLength = subtree.GetLength();
// below, we use ">=" for Match(n, subtree, comp) >= fragmentLength because in case of relaxed conditions,
// we can have multiple matches of the same node
return root.IterateNodesBreadth().Where(n => n.GetLength() >= fragmentLength && Match(n, subtree, comp) == fragmentLength);
}
public static string InterpretChild(ISymbolicExpressionTreeNode node)
{
if (node.SubtreeCount != 1)
{
throw new ArgumentException(string.Format("Expected exactly one child in {0}.", node.Symbol), "node");
}
return(Interpret(node.GetSubtree(0)));
}
/// <summary>
/// Remove, Replace or Insert subtrees
/// </summary>
/// <param name="tree">The symbolic expression tree</param>
/// <param name="parent">The insertion point (ie, the parent node who will receive a new child)</param>
/// <param name="oldChild">The subtree to be replaced</param>
/// <param name="newChild">The replacement subtree</param>
/// <param name="removeSubtree">Flag used to indicate if whole subtrees should be removed (default behavior), or just the subtree root</param>
private void Modify(ISymbolicExpressionTree tree, ISymbolicExpressionTreeNode parent,
ISymbolicExpressionTreeNode oldChild, ISymbolicExpressionTreeNode newChild, bool removeSubtree = true)
{
if (oldChild == null && newChild == null)
{
throw new ArgumentNullException("Cannot deduce operation type from the arguments. Please provide non null operands.");
}
if (oldChild == null)
{
// insertion operation
parent.AddSubtree(newChild);
newChild.Parent = parent;
}
else if (newChild == null)
{
// removal operation
parent.RemoveSubtree(parent.IndexOfSubtree(oldChild));
if (!removeSubtree)
{
for (int i = oldChild.SubtreeCount - 1; i >= 0; --i)
{
var subtree = oldChild.GetSubtree(i);
oldChild.RemoveSubtree(i);
parent.AddSubtree(subtree);
}
}
}
else
{
// replacement operation
var replacementIndex = parent.IndexOfSubtree(oldChild);
parent.RemoveSubtree(replacementIndex);
parent.InsertSubtree(replacementIndex, newChild);
newChild.Parent = parent;
if (changedNodes.ContainsKey(oldChild))
{
changedNodes.Add(newChild, changedNodes[oldChild]); // so that on double click the original node is restored
changedNodes.Remove(oldChild);
}
else
{
changedNodes.Add(newChild, oldChild);
}
}
treeState = IsValid(tree) ? TreeState.Valid : TreeState.Invalid;
switch (treeState)
{
case TreeState.Valid:
this.grpViewHost.Enabled = true;
UpdateModel(Content.Model.SymbolicExpressionTree);
break;
case TreeState.Invalid:
this.grpViewHost.Enabled = false;
break;
}
}
public string FormatOnlyExpression(ISymbolicExpressionTreeNode expressionNode)
{
var stringBuilder = new StringBuilder();
stringBuilder.AppendLine(" for " + CurrentIndexVariable + " = 1:1:rows");
stringBuilder.AppendLine(" estimated(" + CurrentIndexVariable + ") = " + FormatRecursively(expressionNode.GetSubtree(0)) + ";");
stringBuilder.AppendLine(" end;");
return(stringBuilder.ToString());
}
public static string InterpretFunc1(string functionId, ISymbolicExpressionTreeNode node)
{
if (node.SubtreeCount != 1)
{
throw new ArgumentException(string.Format("Expected 1 child in {0}.", node.Symbol.Name), "node");
}
return(string.Format("{0}({1})", functionId, Interpret(node.GetSubtree(0))));
}
// version 1
// only use primary cut point
private void SelectBranchFromNodes1(ISymbolicExpressionTreeNode statementNode, IList <CutPoint> crossoverPoints0, IList <IEnumerable <ISymbolicExpressionTreeNode> > allowedBranchesPerCutpoint, IRandom random, List <string> variables, string variableSettings, ICFGPythonProblemData problemData, out ISymbolicExpressionTreeNode selectedBranch, out CutPoint selectedCutPoint)
{
var jsonOutput = new Dictionary <ISymbolicExpressionTreeNode, JObject>();
var primaryCutPoint = crossoverPoints0[0];
primaryCutPoint.Parent.RemoveSubtree(primaryCutPoint.ChildIndex); // removes parent from child
for (int i = 0; i < crossoverPoints0.Count; i++)
{
var cutPoint = crossoverPoints0[i];
primaryCutPoint.Parent.InsertSubtree(primaryCutPoint.ChildIndex, cutPoint.Child); // this will affect cutPoint.Parent
var jsonCur = SemanticOperatorHelper.EvaluateStatementNode(statementNode, PyProcess, random, problemData, variables, variableSettings, Timeout);
primaryCutPoint.Parent.RemoveSubtree(primaryCutPoint.ChildIndex); // removes intermediate parent from node
cutPoint.Child.Parent = cutPoint.Parent; // restore parent
if (!String.IsNullOrWhiteSpace((string)jsonCur["exception"]))
{
continue;
}
foreach (var possibleBranch in allowedBranchesPerCutpoint[i])
{
JObject jsonPossibleBranch;
if (!jsonOutput.ContainsKey(possibleBranch))
{
var parent = possibleBranch.Parent; // save parent
primaryCutPoint.Parent.InsertSubtree(primaryCutPoint.ChildIndex, possibleBranch); // this will affect node.Parent
jsonPossibleBranch = SemanticOperatorHelper.EvaluateStatementNode(statementNode, PyProcess, random, problemData, variables, variableSettings, Timeout);
primaryCutPoint.Parent.RemoveSubtree(primaryCutPoint.ChildIndex); // removes intermediate parent from node
possibleBranch.Parent = parent; // restore parent
jsonOutput.Add(possibleBranch, jsonPossibleBranch);
}
else
{
jsonPossibleBranch = jsonOutput[possibleBranch];
}
if (!String.IsNullOrWhiteSpace((string)jsonPossibleBranch["exception"]))
{
continue;
}
if (!JToken.EqualityComparer.Equals(jsonCur, jsonPossibleBranch))
{
primaryCutPoint.Parent.InsertSubtree(primaryCutPoint.ChildIndex, primaryCutPoint.Child); // restore primaryCutPoint
selectedBranch = possibleBranch;
selectedCutPoint = cutPoint;
return;
}
}
}
primaryCutPoint.Parent.InsertSubtree(primaryCutPoint.ChildIndex, primaryCutPoint.Child); // restore primaryCutPoint
// no difference was found with any comparison, select random
selectedBranch = allowedBranchesPerCutpoint[0].SampleRandom(random);
selectedCutPoint = crossoverPoints0[0];
}
/// <summary>
/// Takes two parent individuals P0 and P1.
/// Randomly choose a node i from the first parent, then test all nodes j from the second parent to determine the best child that would be obtained by swapping i for j.
/// </summary>
public static ISymbolicExpressionTree Cross(IRandom random, ISymbolicExpressionTree parent0, ISymbolicExpressionTree parent1, IExecutionContext context,
ISymbolicDataAnalysisSingleObjectiveEvaluator <T> evaluator, T problemData, List <int> rows, int maxDepth, int maxLength)
{
var crossoverPoints0 = new List <CutPoint>();
parent0.Root.ForEachNodePostfix((n) => {
if (n.Parent != null && n.Parent != parent0.Root)
{
crossoverPoints0.Add(new CutPoint(n.Parent, n));
}
});
CutPoint crossoverPoint0 = crossoverPoints0.SampleRandom(random);
int level = parent0.Root.GetBranchLevel(crossoverPoint0.Child);
int length = parent0.Root.GetLength() - crossoverPoint0.Child.GetLength();
var allowedBranches = new List <ISymbolicExpressionTreeNode>();
parent1.Root.ForEachNodePostfix((n) => {
if (n.Parent != null && n.Parent != parent1.Root)
{
if (n.GetDepth() + level <= maxDepth && n.GetLength() + length <= maxLength && crossoverPoint0.IsMatchingPointType(n))
{
allowedBranches.Add(n);
}
}
});
if (allowedBranches.Count == 0)
{
return(parent0);
}
// create symbols in order to improvize an ad-hoc tree so that the child can be evaluated
ISymbolicExpressionTreeNode selectedBranch = null;
var nodeQualities = new List <Tuple <ISymbolicExpressionTreeNode, double> >();
var originalChild = crossoverPoint0.Child;
foreach (var node in allowedBranches)
{
var parent = node.Parent;
Swap(crossoverPoint0, node); // the swap will set the nodes parent to crossoverPoint0.Parent
IExecutionContext childContext = new ExecutionContext(context, evaluator, context.Scope);
double quality = evaluator.Evaluate(childContext, parent0, problemData, rows);
Swap(crossoverPoint0, originalChild); // swap the child back (so that the next swap will not affect the currently swapped node from parent1)
nodeQualities.Add(new Tuple <ISymbolicExpressionTreeNode, double>(node, quality));
node.Parent = parent; // restore correct parent
}
nodeQualities.Sort((a, b) => a.Item2.CompareTo(b.Item2));
selectedBranch = evaluator.Maximization ? nodeQualities.Last().Item1 : nodeQualities.First().Item1;
// swap the node that would create the best offspring
Swap(crossoverPoint0, selectedBranch);
return(parent0);
}
public Dictionary <ISymbolicExpressionTreeNode, ISymbolicExpressionTreeNode> ComputeBottomUpMapping(ISymbolicExpressionTreeNode n1, ISymbolicExpressionTreeNode n2)
{
var comparer = new SymbolicExpressionTreeNodeComparer(); // use a node comparer because it's faster than calling node.ToString() (strings are expensive) and comparing strings
var compactedGraph = Compact(n1, n2);
var forwardMap = new Dictionary <ISymbolicExpressionTreeNode, ISymbolicExpressionTreeNode>(); // nodes of t1 => nodes of t2
var reverseMap = new Dictionary <ISymbolicExpressionTreeNode, ISymbolicExpressionTreeNode>(); // nodes of t2 => nodes of t1
// visit nodes in order of decreasing height to ensure correct mapping
var nodes1 = n1.IterateNodesPrefix().OrderByDescending(x => x.GetDepth()).ToList();
var nodes2 = n2.IterateNodesPrefix().ToList();
for (int i = 0; i < nodes1.Count; ++i)
{
var v = nodes1[i];
if (forwardMap.ContainsKey(v))
{
continue;
}
var kv = compactedGraph[v];
ISymbolicExpressionTreeNode w = null;
for (int j = 0; j < nodes2.Count; ++j)
{
var t = nodes2[j];
if (reverseMap.ContainsKey(t) || compactedGraph[t] != kv)
{
continue;
}
w = t;
break;
}
if (w == null)
{
continue;
}
// at this point we know that v and w are isomorphic, however, the mapping cannot be done directly
// (as in the paper) because the trees are unordered (subtree order might differ). the solution is
// to sort subtrees from under commutative labels (this will work because the subtrees are isomorphic!)
// while iterating over the two subtrees
var vv = IterateBreadthOrdered(v, comparer).ToList();
var ww = IterateBreadthOrdered(w, comparer).ToList();
int len = Math.Min(vv.Count, ww.Count);
for (int j = 0; j < len; ++j)
{
var s = vv[j];
var t = ww[j];
Debug.Assert(!reverseMap.ContainsKey(t));
forwardMap[s] = t;
reverseMap[t] = s;
}
}
return(forwardMap);
}
private void SwapVariableWithTree(VariableTreeNode variableNode, ISymbolicExpressionTreeNode treeNode) {
var parent = variableNode.Parent;
int index = parent.IndexOfSubtree(variableNode);
parent.RemoveSubtree(index);
if (!variableNode.Weight.IsAlmost(1.0))
treeNode = CreateNodeFromWeight(treeNode, variableNode);
parent.InsertSubtree(index, treeNode);
}
public static ISymbolicExpressionTreeNode GetStatementNode(ISymbolicExpressionTreeNode parent, IEnumerable <string> statementProductionNames)
{
ISymbolicExpressionTreeNode statement = parent;
while (statement != null && !statementProductionNames.Contains(statement.Symbol.Name))
{
statement = statement.Parent;
}
return(statement);
}
public void SortSubtrees(ISymbolicExpressionTreeNode node) {
if (node.SubtreeCount == 0) return;
var subtrees = node.Subtrees as List<ISymbolicExpressionTreeNode> ?? node.Subtrees.ToList();
if (IsSymmetric(node.Symbol)) {
var comparer = new SymbolicExpressionTreeNodeComparer();
subtrees.Sort(comparer);
}
foreach (var s in subtrees)
SortSubtrees(s);
}
public static double ComputeSimilarity(ISymbolicExpressionTreeNode t1, ISymbolicExpressionTreeNode t2, bool simplify = false, bool strict = false)
{
var lh = t1.Hash(simplify, strict);
var rh = t2.Hash(simplify, strict);
Array.Sort(lh);
Array.Sort(rh);
return(ComputeSimilarity(lh, rh));
}
private ISymbolicExpressionTreeNode ParseArgument(Queue <Token> tokens)
{
Token argTok = tokens.Dequeue();
Debug.Assert(argTok.StringValue == "ARG");
Argument argument = new Argument((int)tokens.Dequeue().DoubleValue);
ISymbolicExpressionTreeNode argNode = argument.CreateTreeNode();
return(argNode);
}
public static string InterpretOnBulletMissed(ISymbolicExpressionTreeNode node)
{
string code = string.Join(Environment.NewLine, node.Subtrees.Select(Interpret));
return(string.Format(
@"public void onBulletMissed(BulletMissedEvent e) {{
{0}
execute();
}}", code));
}
private void FormatIf(ISymbolicExpressionTreeNode node, StringBuilder strBuilder)
{
strBuilder.Append("If[Greater[");
FormatRecursively(node.GetSubtree(0), strBuilder);
strBuilder.Append(", 0], ");
FormatRecursively(node.GetSubtree(1), strBuilder);
strBuilder.Append(", ");
FormatRecursively(node.GetSubtree(2), strBuilder);
strBuilder.Append("]");
}
private ISymbolicExpressionTreeNode ParseInvoke(Queue <Token> tokens)
{
Token invokeTok = tokens.Dequeue();
Debug.Assert(invokeTok.StringValue == "CALL");
InvokeFunction invokeSym = new InvokeFunction(tokens.Dequeue().StringValue);
ISymbolicExpressionTreeNode invokeNode = invokeSym.CreateTreeNode();
return(invokeNode);
}
public static string InterpretOnBulletHit(ISymbolicExpressionTreeNode node)
{
var Prefix = "public void onBulletHit(BulletHitEvent e) {";
var Suffix =
@"execute();
}";
string code = string.Join(Environment.NewLine, node.Subtrees.Select(Interpret));
return(Prefix + code + Environment.NewLine + Suffix);
}
private static int SampleArity(IRandom random, ISymbolicExpressionTreeNode node, int targetLength, int maxDepth)
{
// select actualArity randomly with the constraint that the sub-trees in the minimal arity can become large enough
int minArity = node.Grammar.GetMinimumSubtreeCount(node.Symbol);
int maxArity = node.Grammar.GetMaximumSubtreeCount(node.Symbol);
if (maxArity > targetLength)
{
maxArity = targetLength;
}
if (minArity == maxArity)
{
return(minArity);
}
// the min number of sub-trees has to be set to a value that is large enough so that the largest possible tree is at least tree length
// if 1..3 trees are possible and the largest possible first sub-tree is smaller larger than the target length then minArity should be at least 2
long aggregatedLongestExpressionLength = 0;
for (int i = 0; i < maxArity; i++)
{
aggregatedLongestExpressionLength += (from s in node.Grammar.GetAllowedChildSymbols(node.Symbol, i)
where s.InitialFrequency > 0.0
select node.Grammar.GetMaximumExpressionLength(s, maxDepth)).Max();
if (i > minArity && aggregatedLongestExpressionLength < targetLength)
{
minArity = i + 1;
}
else
{
break;
}
}
// the max number of sub-trees has to be set to a value that is small enough so that the smallest possible tree is at most tree length
// if 1..3 trees are possible and the smallest possible first sub-tree is already larger than the target length then maxArity should be at most 0
long aggregatedShortestExpressionLength = 0;
for (int i = 0; i < maxArity; i++)
{
aggregatedShortestExpressionLength += (from s in node.Grammar.GetAllowedChildSymbols(node.Symbol, i)
where s.InitialFrequency > 0.0
select node.Grammar.GetMinimumExpressionLength(s)).Min();
if (aggregatedShortestExpressionLength > targetLength)
{
maxArity = i;
break;
}
}
if (minArity > maxArity)
{
return(-1);
}
return(random.Next(minArity, maxArity + 1));
}
private void FormatSubtraction(ISymbolicExpressionTreeNode node, StringBuilder strBuilder)
{
if (node.SubtreeCount == 1)
{
strBuilder.Append("-");
FormatRecursively(node.GetSubtree(0), strBuilder);
return;
}
//Default case: more than 1 child
FormatOperator(node, "-", strBuilder);
}
private void removeNodeToolStripMenuItem_Click(object sender, EventArgs e)
{
var node = currSelected.Content;
if (node == tempNode)
{
tempNode = null;
}
ModifyTree(Tree, node.Parent, node, null, removeSubtree: false);
currSelected = null; // because the currently selected node was just deleted
}
public static string InterpretBinaryOperator(string opSy, ISymbolicExpressionTreeNode node)
{
if (node.SubtreeCount < 2)
{
throw new ArgumentException(string.Format("Expected at least two children in {0}.", node.Symbol), "node");
}
string result = string.Join(opSy, node.Subtrees.Select(Interpret));
return("(" + result + ")");
}
public static ulong[] Hash(this ISymbolicExpressionTreeNode node, bool simplify = false, bool strict = false)
{
var hashNodes = simplify ? node.MakeNodes(strict).Simplify(HashFunction) : node.MakeNodes(strict).Sort(HashFunction);
var hashes = new ulong[hashNodes.Length];
for (int i = 0; i < hashes.Length; ++i)
{
hashes[i] = hashNodes[i].CalculatedHashValue;
}
return(hashes);
}
public static byte MapSymbolToOpCode(ISymbolicExpressionTreeNode treeNode)
{
if (symbolToOpcode.TryGetValue(treeNode.Symbol.GetType(), out byte opCode))
{
return(opCode);
}
else
{
throw new NotSupportedException("Symbol: " + treeNode.Symbol);
}
}
private ISymbolicExpressionTreeNode CreateNodeFromWeight(ISymbolicExpressionTreeNode transformationTree, VariableTreeNode variableNode)
{
var multiplicationNode = new SymbolicExpressionTreeNode(new Multiplication());
multiplicationNode.AddSubtree(new ConstantTreeNode(new Constant())
{
Value = variableNode.Weight
});
multiplicationNode.AddSubtree(transformationTree);
return(multiplicationNode);
}
public ISymbolicExpressionTree Parse(string str)
{
ISymbolicExpressionTreeNode root = programRootSymbol.CreateTreeNode();
ISymbolicExpressionTreeNode start = startSymbol.CreateTreeNode();
var allTokens = GetAllTokens(str).ToArray();
ISymbolicExpressionTreeNode mainBranch = ParseS(new Queue <Token>(allTokens));
// only a main branch was given => insert the main branch into the default tree template
root.AddSubtree(start);
start.AddSubtree(mainBranch);
return(new SymbolicExpressionTree(root));
}
private JObject GenerateOriginalJson(CutPoint crossoverPoint0, IEnumerable <string> statementProductionNames, ISymbolicExpressionTree parent0, string variableSettings, ItemArray <PythonStatementSemantic> semantic0, ICFGPythonProblemData problemData, IRandom random, List <string> variables)
{
ISymbolicExpressionTreeNode statementOriginal = SemanticOperatorHelper.GetStatementNode(crossoverPoint0.Child, statementProductionNames); // statementOriginal is not always the same as statement
var statementPos0 = parent0.IterateNodesPrefix().ToList().IndexOf(statementOriginal);
if (String.IsNullOrEmpty(variableSettings))
{
var curSemantics = semantic0.First(x => x.TreeNodePrefixPos == statementPos0);
variableSettings = SemanticOperatorHelper.SemanticToPythonVariableSettings(curSemantics.Before, problemData.Variables.GetVariableTypes());
}
return(SemanticOperatorHelper.EvaluateStatementNode(statementOriginal, PyProcess, random, problemData, variables, variableSettings, Timeout));
}
private void removeSubtreeToolStripMenuItem_Click(object sender, EventArgs e)
{
var node = currSelected.Content;
if (node.IterateNodesPostfix().Contains(tempNode))
{
tempNode = null;
}
ModifyTree(Tree, node.Parent, node, null, removeSubtree: true);
currSelected = null; // because the currently selected node was just deleted
contextMenuStrip.Close(); // avoid display of submenus since the action has already been performed
}
private void FormatSubtraction(ISymbolicExpressionTreeNode node, StringBuilder strBuilder)
{
strBuilder.Append("Subtract[");
FormatRecursively(node.GetSubtree(0), strBuilder);
strBuilder.Append(", Times[-1");
foreach (var t in node.Subtrees)
{
strBuilder.Append(",");
FormatRecursively(t, strBuilder);
}
strBuilder.Append("]]");
}
private void SwitchNode(ISymbolicExpressionTreeNode root, ISymbolicExpressionTreeNode oldBranch, ISymbolicExpressionTreeNode newBranch)
{
for (int i = 0; i < root.SubtreeCount; i++)
{
if (root.GetSubtree(i) == oldBranch)
{
root.RemoveSubtree(i);
root.InsertSubtree(i, newBranch);
return;
}
}
}
public static string InterpretRun(ISymbolicExpressionTreeNode node)
{
string code = string.Join(Environment.NewLine, node.Subtrees.Select(Interpret));
return(string.Format(
@"public void run() {{
setAdjustGunForRobotTurn(true);
turnRadarRightRadians(Double.POSITIVE_INFINITY);
{0}
execute();
}}", code));
}
private void FormatAverage(ISymbolicExpressionTreeNode node, StringBuilder strBuilder)
{
// mean function needs a list of values
strBuilder.Append("Mean[{");
FormatRecursively(node.GetSubtree(0), strBuilder);
for (int i = 1; i < node.SubtreeCount; i++)
{
strBuilder.Append(",");
FormatRecursively(node.GetSubtree(i), strBuilder);
}
strBuilder.Append("}]");
}
// version 2
// check the statement node of every cut point in the parent
// takes longer, but really checks for differences
private void SelectBranchFromNodes2(IEnumerable <string> statementProductionNames, IList <CutPoint> crossoverPoints0, IList <IEnumerable <ISymbolicExpressionTreeNode> > allowedBranchesPerCutpoint, IRandom random, List <string> variables, string variableSettings, ICFGPythonProblemData problemData, out ISymbolicExpressionTreeNode selectedBranch, out CutPoint selectedCutPoint)
{
for (int i = 0; i < crossoverPoints0.Count; i++)
{
var cutPoint = crossoverPoints0[i];
ISymbolicExpressionTreeNode curStatementNode = SemanticOperatorHelper.GetStatementNode(cutPoint.Child, statementProductionNames);
var jsonCur = SemanticOperatorHelper.EvaluateStatementNode(curStatementNode, PyProcess, random, problemData, variables, variableSettings, Timeout);
if (!String.IsNullOrWhiteSpace((string)jsonCur["exception"]))
{
continue;
}
cutPoint.Parent.RemoveSubtree(cutPoint.ChildIndex); // removes parent from node
foreach (var possibleBranch in allowedBranchesPerCutpoint[i])
{
JObject jsonPossibleBranch;
if (curStatementNode == cutPoint.Child)
{
// shouldn't actually happen
jsonPossibleBranch = SemanticOperatorHelper.EvaluateStatementNode(possibleBranch, PyProcess, random, problemData, variables, variableSettings, Timeout);
}
else
{
var parent = possibleBranch.Parent; // save parent
cutPoint.Parent.InsertSubtree(cutPoint.ChildIndex, possibleBranch); // this will affect node.Parent
jsonPossibleBranch = SemanticOperatorHelper.EvaluateStatementNode(curStatementNode, PyProcess, random, problemData, variables, variableSettings, Timeout);
cutPoint.Parent.RemoveSubtree(cutPoint.ChildIndex); // removes intermediate parent from node
possibleBranch.Parent = parent; // restore parent
}
if (!String.IsNullOrWhiteSpace((string)jsonPossibleBranch["exception"]))
{
continue;
}
if (JToken.EqualityComparer.Equals(jsonCur, jsonPossibleBranch))
{
continue;
} // equal json, therefore continue
cutPoint.Parent.InsertSubtree(cutPoint.ChildIndex, cutPoint.Child); // restore cutPoint
selectedBranch = possibleBranch;
selectedCutPoint = cutPoint;
return;
}
cutPoint.Parent.InsertSubtree(cutPoint.ChildIndex, cutPoint.Child); // restore cutPoint
}
// no difference was found with any comparison, select randomly
// only select form the first cut point, as the other cut points might not have allowedBranchesPerCutpoint
selectedBranch = allowedBranchesPerCutpoint[0].SampleRandom(random);
selectedCutPoint = crossoverPoints0[0];
}
public static void Create(IRandom random, ISymbolicExpressionTreeNode seedNode, int maxDepth)
{
// make sure it is possible to create a trees smaller than maxDepth
if (seedNode.Grammar.GetMinimumExpressionDepth(seedNode.Symbol) > maxDepth)
{
throw new ArgumentException("Cannot create trees of depth " + maxDepth + " or smaller because of grammar constraints.", "maxDepth");
}
int arity = seedNode.Grammar.GetMaximumSubtreeCount(seedNode.Symbol);
// Throw an exception if the seedNode happens to be a terminal, since in this case we cannot grow a tree.
if (arity <= 0)
{
throw new ArgumentException("Cannot grow tree. Seed node shouldn't have arity zero.");
}
var allowedSymbols = seedNode.Grammar.AllowedSymbols
.Where(s => s.InitialFrequency > 0.0 && seedNode.Grammar.GetMaximumSubtreeCount(s) > 0)
.ToList();
for (var i = 0; i < arity; i++)
{
var possibleSymbols = allowedSymbols
.Where(s => seedNode.Grammar.IsAllowedChildSymbol(seedNode.Symbol, s, i) &&
seedNode.Grammar.GetMinimumExpressionDepth(s) <= maxDepth &&
seedNode.Grammar.GetMaximumExpressionDepth(s) >= maxDepth)
.ToList();
var weights = possibleSymbols.Select(s => s.InitialFrequency).ToList();
#pragma warning disable 612, 618
var selectedSymbol = possibleSymbols.SelectRandom(weights, random);
#pragma warning restore 612, 618
var tree = selectedSymbol.CreateTreeNode();
if (tree.HasLocalParameters)
{
tree.ResetLocalParameters(random);
}
seedNode.AddSubtree(tree);
}
// Only iterate over the non-terminal nodes (those which have arity > 0)
// Start from depth 2 since the first two levels are formed by the rootNode and the seedNode
foreach (var subTree in seedNode.Subtrees)
{
if (subTree.Grammar.GetMaximumSubtreeCount(subTree.Symbol) > 0)
{
RecursiveCreate(random, subTree, 2, maxDepth);
}
}
}
private static string FormatRecursively(ISymbolicExpressionTreeNode node) {
StringBuilder strBuilder = new StringBuilder();
if (node.Subtrees.Count() > 0) {
// node
foreach (var subtree in node.Subtrees) {
strBuilder.Append(FormatRecursively(subtree));
}
} else {
// leaf
strBuilder.Append(node.ToString());
}
return strBuilder.ToString();
}
///<summary>
/// Finds the longest common subsequence in quadratic time and linear space
/// Variant of:
/// D. S. Hirschberg. A linear space algorithm for or computing maximal common subsequences. 1975.
/// http://dl.acm.org/citation.cfm?id=360861
/// </summary>
/// <returns>Number of pairs that were matched</returns>
public static int Match(ISymbolicExpressionTreeNode a, ISymbolicExpressionTreeNode b, ISymbolicExpressionTreeNodeSimilarityComparer comp) {
if (!comp.Equals(a, b)) return 0;
int m = a.SubtreeCount;
int n = b.SubtreeCount;
if (m == 0 || n == 0) return 1;
var matrix = new int[m + 1, n + 1];
for (int i = 1; i <= m; ++i) {
var ai = a.GetSubtree(i - 1);
for (int j = 1; j <= n; ++j) {
var bj = b.GetSubtree(j - 1);
int match = Match(ai, bj, comp);
matrix[i, j] = Math.Max(Math.Max(matrix[i, j - 1], matrix[i - 1, j]), matrix[i - 1, j - 1] + match);
}
}
return matrix[m, n] + 1;
}
public static ISymbolicExpressionTreeNode Difference(this ISymbolicExpressionTreeNode node, ISymbolicExpressionTreeNode other) {
var a = node.IterateNodesPrefix().ToList();
var b = other.IterateNodesPrefix().ToList();
var list = new List<ISymbolicExpressionTreeNode>();
for (int i = 0, j = 0; i < a.Count && j < b.Count; ++i, ++j) {
var s1 = a[i].ToString();
var s2 = b[j].ToString();
if (s1 == s2) continue;
list.Add(a[i]);
// skip subtrees since the parents are already different
i += a[i].SubtreeCount;
j += b[j].SubtreeCount;
}
ISymbolicExpressionTreeNode result = list.Count > 0 ? LowestCommonAncestor(node, list) : null;
return result;
}
/// <summary>
/// Randomly returns a terminal node for the given <paramref name="parentNode"/>.
/// (A terminal has got a minimum and maximum arity of 0.)
/// </summary>
/// <param name="parentNode">parent node for which a child node is returned randomly</param>
/// <param name="grammar">grammar to determine the allowed child symbols for parentNode</param>
/// <param name="random">random number generator</param>
/// <returns>randomly chosen terminal node with arity 0 or null, if no terminal node exists</returns>
protected ISymbolicExpressionTreeNode GetRandomTerminalNode(ISymbolicExpressionTreeNode parentNode,
ISymbolicExpressionGrammar grammar,
IRandom random) {
// only select specific symbols, which can be interpreted ...
var possibleSymbolsList = (from s in grammar.GetAllowedChildSymbols(parentNode.Symbol)
where s.InitialFrequency > 0.0
where s.MaximumArity == 0
where s.MinimumArity == 0
select s).ToList();
// no terminal node exists for the given parent node
if (!possibleSymbolsList.Any()) return null;
var newNode = possibleSymbolsList.SampleRandom(random).CreateTreeNode();
if (newNode.HasLocalParameters) newNode.ResetLocalParameters(random);
return newNode;
}
private static IEnumerable<Instruction> Compile(ISymbolicExpressionTreeNode branch, Func<ISymbolicExpressionTreeNode, byte> opCodeMapper, IEnumerable<Func<Instruction, Instruction>> postInstructionCompiledHooks) {
foreach (var node in branch.IterateNodesPrefix()) {
Instruction instr = new Instruction();
int subtreesCount = node.SubtreeCount;
if (subtreesCount > 255) throw new ArgumentException("Number of subtrees is too big (>255)");
instr.nArguments = (byte)subtreesCount;
instr.opCode = opCodeMapper(node);
if (node.Symbol is Argument) {
var argNode = (ArgumentTreeNode)node;
instr.data = (ushort)argNode.Symbol.ArgumentIndex;
}
instr.dynamicNode = node;
foreach (var hook in postInstructionCompiledHooks) {
instr = hook(instr);
}
yield return instr;
}
}
protected static double CalculateReplacementValue(ISymbolicExpressionTreeNode node, ISymbolicExpressionTree sourceTree, ISymbolicDataAnalysisExpressionTreeInterpreter interpreter,
IDataset dataset, IEnumerable<int> rows) {
//optimization: constant nodes return always the same value
ConstantTreeNode constantNode = node as ConstantTreeNode;
if (constantNode != null) return constantNode.Value;
var rootSymbol = new ProgramRootSymbol().CreateTreeNode();
var startSymbol = new StartSymbol().CreateTreeNode();
rootSymbol.AddSubtree(startSymbol);
startSymbol.AddSubtree((ISymbolicExpressionTreeNode)node.Clone());
var tempTree = new SymbolicExpressionTree(rootSymbol);
// clone ADFs of source tree
for (int i = 1; i < sourceTree.Root.SubtreeCount; i++) {
tempTree.Root.AddSubtree((ISymbolicExpressionTreeNode)sourceTree.Root.GetSubtree(i).Clone());
}
return interpreter.GetSymbolicExpressionTreeValues(tempTree, dataset, rows).Median();
}
public Dictionary<ISymbolicExpressionTreeNode, ISymbolicExpressionTreeNode> ComputeBottomUpMapping(ISymbolicExpressionTreeNode n1, ISymbolicExpressionTreeNode n2) {
var comparer = new SymbolicExpressionTreeNodeComparer(); // use a node comparer because it's faster than calling node.ToString() (strings are expensive) and comparing strings
var compactedGraph = Compact(n1, n2);
var forwardMap = new Dictionary<ISymbolicExpressionTreeNode, ISymbolicExpressionTreeNode>(); // nodes of t1 => nodes of t2
var reverseMap = new Dictionary<ISymbolicExpressionTreeNode, ISymbolicExpressionTreeNode>(); // nodes of t2 => nodes of t1
// visit nodes in order of decreasing height to ensure correct mapping
var nodes1 = n1.IterateNodesPrefix().OrderByDescending(x => x.GetDepth()).ToList();
var nodes2 = n2.IterateNodesPrefix().ToList();
for (int i = 0; i < nodes1.Count; ++i) {
var v = nodes1[i];
if (forwardMap.ContainsKey(v))
continue;
var kv = compactedGraph[v];
ISymbolicExpressionTreeNode w = null;
for (int j = 0; j < nodes2.Count; ++j) {
var t = nodes2[j];
if (reverseMap.ContainsKey(t) || compactedGraph[t] != kv)
continue;
w = t;
break;
}
if (w == null) continue;
// at this point we know that v and w are isomorphic, however, the mapping cannot be done directly
// (as in the paper) because the trees are unordered (subtree order might differ). the solution is
// to sort subtrees from under commutative labels (this will work because the subtrees are isomorphic!)
// while iterating over the two subtrees
var vv = IterateBreadthOrdered(v, comparer).ToList();
var ww = IterateBreadthOrdered(w, comparer).ToList();
int len = Math.Min(vv.Count, ww.Count);
for (int j = 0; j < len; ++j) {
var s = vv[j];
var t = ww[j];
Debug.Assert(!reverseMap.ContainsKey(t));
forwardMap[s] = t;
reverseMap[t] = s;
}
}
return forwardMap;
}
public bool Equals(ISymbolicExpressionTreeNode a, ISymbolicExpressionTreeNode b) {
if (!(a is SymbolicExpressionTreeTerminalNode))
// if a and b are non terminal nodes, check equality of symbol names
return !(b is SymbolicExpressionTreeTerminalNode) && a.Symbol.Name.Equals(b.Symbol.Name);
var va = a as VariableTreeNode;
if (va != null) {
var vb = b as VariableTreeNode;
if (vb == null) return false;
return (!MatchVariableNames || va.VariableName.Equals(vb.VariableName)) && (!MatchVariableWeights || va.Weight.Equals(vb.Weight));
}
var ca = a as ConstantTreeNode;
if (ca != null) {
var cb = b as ConstantTreeNode;
if (cb == null) return false;
return (!MatchConstantValues || ca.Value.Equals(cb.Value));
}
return false;
}
/// <summary>
/// Remove, Replace or Insert subtrees
/// </summary>
/// <param name="tree">The symbolic expression tree</param>
/// <param name="parent">The insertion point (ie, the parent node who will receive a new child)</param>
/// <param name="oldChild">The subtree to be replaced</param>
/// <param name="newChild">The replacement subtree</param>
/// <param name="removeSubtree">Flag used to indicate if whole subtrees should be removed (default behavior), or just the subtree root</param>
private void Modify(ISymbolicExpressionTree tree, ISymbolicExpressionTreeNode parent,
ISymbolicExpressionTreeNode oldChild, ISymbolicExpressionTreeNode newChild, bool removeSubtree = true) {
if (oldChild == null && newChild == null)
throw new ArgumentNullException("Cannot deduce operation type from the arguments. Please provide non null operands.");
if (oldChild == null) {
// insertion operation
parent.AddSubtree(newChild);
newChild.Parent = parent;
} else if (newChild == null) {
// removal operation
parent.RemoveSubtree(parent.IndexOfSubtree(oldChild));
if (!removeSubtree) {
for (int i = oldChild.SubtreeCount - 1; i >= 0; --i) {
var subtree = oldChild.GetSubtree(i);
oldChild.RemoveSubtree(i);
parent.AddSubtree(subtree);
}
}
} else {
// replacement operation
var replacementIndex = parent.IndexOfSubtree(oldChild);
parent.RemoveSubtree(replacementIndex);
parent.InsertSubtree(replacementIndex, newChild);
newChild.Parent = parent;
if (changedNodes.ContainsKey(oldChild)) {
changedNodes.Add(newChild, changedNodes[oldChild]); // so that on double click the original node is restored
changedNodes.Remove(oldChild);
} else {
changedNodes.Add(newChild, oldChild);
}
}
treeState = IsValid(tree) ? TreeState.Valid : TreeState.Invalid;
switch (treeState) {
case TreeState.Valid:
this.grpViewHost.Enabled = true;
UpdateModel(Content.Model.SymbolicExpressionTree);
break;
case TreeState.Invalid:
this.grpViewHost.Enabled = false;
break;
}
}
private string FormatRecursively(ISymbolicExpressionTreeNode node) {
StringBuilder strBuilder = new StringBuilder();
currentLag = 0;
FormatBegin(node, strBuilder);
if (node.SubtreeCount > 0) {
strBuilder.Append(FormatRecursively(node.GetSubtree(0)));
}
int i = 1;
foreach (SymbolicExpressionTreeNode subTree in node.Subtrees.Skip(1)) {
FormatSep(node, strBuilder, i);
// format the whole subtree
strBuilder.Append(FormatRecursively(subTree));
i++;
}
FormatEnd(node, strBuilder);
return strBuilder.ToString();
}
private string FormatRecursively(ISymbolicExpressionTreeNode node, int indentLength) {
StringBuilder strBuilder = new StringBuilder();
if (Indent) strBuilder.Append(' ', indentLength);
strBuilder.Append("(");
// internal nodes or leaf nodes?
if (node.Subtrees.Count() > 0) {
// symbol on same line as '('
strBuilder.AppendLine(node.ToString());
// each subtree expression on a new line
// and closing ')' also on new line
foreach (var subtree in node.Subtrees) {
strBuilder.AppendLine(FormatRecursively(subtree, indentLength + 2));
}
if (Indent) strBuilder.Append(' ', indentLength);
strBuilder.Append(")");
} else {
// symbol in the same line with as '(' and ')'
strBuilder.Append(node.ToString());
strBuilder.Append(")");
}
return strBuilder.ToString();
}
// the argumentTrees list contains already expanded trees used as arguments for invocations
private ISymbolicExpressionTreeNode MacroExpand(ISymbolicExpressionTreeNode root, ISymbolicExpressionTreeNode node, IList<ISymbolicExpressionTreeNode> argumentTrees) {
List<ISymbolicExpressionTreeNode> subtrees = new List<ISymbolicExpressionTreeNode>(node.Subtrees);
while (node.SubtreeCount > 0) node.RemoveSubtree(0);
if (node.Symbol is InvokeFunction) {
var invokeSym = node.Symbol as InvokeFunction;
var defunNode = FindFunctionDefinition(root, invokeSym.FunctionName);
var macroExpandedArguments = new List<ISymbolicExpressionTreeNode>();
foreach (var subtree in subtrees) {
macroExpandedArguments.Add(MacroExpand(root, subtree, argumentTrees));
}
return MacroExpand(root, defunNode, macroExpandedArguments);
} else if (node.Symbol is Argument) {
var argSym = node.Symbol as Argument;
// return the correct argument sub-tree (already macro-expanded)
return (SymbolicExpressionTreeNode)argumentTrees[argSym.ArgumentIndex].Clone();
} else {
// recursive application
foreach (var subtree in subtrees) {
node.AddSubtree(MacroExpand(root, subtree, argumentTrees));
}
return node;
}
}
/// <summary>
/// Returns a randomly chosen child node for the given <paramref name="parentNode"/>.
/// </summary>
/// <param name="parentNode">parent node to find a child node randomly for</param>
/// <param name="genotype">integer vector, which should be mapped to a tree</param>
/// <param name="grammar">grammar used to define the allowed child symbols</param>
/// <param name="genotypeIndex">index in the integer vector; can be greater than vector length</param>
/// <param name="random">random number generator</param>
/// <returns>randomly chosen child node or null, if no child node exits</returns>
protected ISymbolicExpressionTreeNode GetNewChildNode(ISymbolicExpressionTreeNode parentNode,
IntegerVector genotype,
ISymbolicExpressionGrammar grammar,
int genotypeIndex,
IRandom random) {
// only select specific symbols, which can be interpreted ...
IEnumerable<ISymbol> symbolList = (from s in grammar.GetAllowedChildSymbols(parentNode.Symbol)
where s.InitialFrequency > 0.0
select s).ToList();
int prodRuleCount = symbolList.Count();
// no child node exists for the given parent node
if (prodRuleCount < 1) return null;
// genotypeIndex % genotype.Length, if wrapping is allowed
int prodRuleIndex = genotype[genotypeIndex] % prodRuleCount;
var newNode = symbolList.ElementAt(prodRuleIndex).CreateTreeNode();
if (newNode.HasLocalParameters) newNode.ResetLocalParameters(random);
return newNode;
}
public bool IsMatchingPointType(ISymbolicExpressionTreeNode newChild) {
var parent = this.Parent;
if (newChild == null) {
// make sure that one subtree can be removed and that only the last subtree is removed
return grammar.GetMinimumSubtreeCount(parent.Symbol) < parent.SubtreeCount &&
this.ChildIndex == parent.SubtreeCount - 1;
} else {
// check syntax constraints of direct parent - child relation
if (!grammar.ContainsSymbol(newChild.Symbol) ||
!grammar.IsAllowedChildSymbol(parent.Symbol, newChild.Symbol, this.ChildIndex))
return false;
bool result = true;
// check point type for the whole branch
newChild.ForEachNodePostfix((n) => {
result =
result &&
grammar.ContainsSymbol(n.Symbol) &&
n.SubtreeCount >= grammar.GetMinimumSubtreeCount(n.Symbol) &&
n.SubtreeCount <= grammar.GetMaximumSubtreeCount(n.Symbol);
});
return result;
}
}
private static int SampleArity(IRandom random, ISymbolicExpressionTreeNode node) {
var minArity = node.Grammar.GetMinimumSubtreeCount(node.Symbol);
var maxArity = node.Grammar.GetMaximumSubtreeCount(node.Symbol);
return random.Next(minArity, maxArity + 1);
}
private static void RecursiveCreate(IRandom random, ISymbolicExpressionTreeNode root, int currentDepth, int maxDepth) {
var arity = SampleArity(random, root);
if (arity == 0)
return;
var allowedSymbols = root.Grammar.AllowedSymbols.Where(s => s.InitialFrequency > 0.0).ToList();
for (var i = 0; i < arity; i++) {
var possibleSymbols = allowedSymbols.Where(s => root.Grammar.IsAllowedChildSymbol(root.Symbol, s, i) &&
root.Grammar.GetMinimumExpressionDepth(s) - 1 <= maxDepth - currentDepth).ToList();
if (!possibleSymbols.Any())
throw new InvalidOperationException("No symbols are available for the tree.");
var weights = possibleSymbols.Select(s => s.InitialFrequency).ToList();
#pragma warning disable 612, 618
var selectedSymbol = possibleSymbols.SelectRandom(weights, random);
#pragma warning restore 612, 618
var tree = selectedSymbol.CreateTreeNode();
if (tree.HasLocalParameters) tree.ResetLocalParameters(random);
root.AddSubtree(tree);
}
if (maxDepth > currentDepth)
foreach (var subTree in root.Subtrees)
if (subTree.Grammar.GetMaximumSubtreeCount(subTree.Symbol) != 0)
RecursiveCreate(random, subTree, currentDepth + 1, maxDepth);
}