public void ClearListsTablesFigures(bool clear_following)
{
if (!clear_following)
{
tb_td_hits.Clear();
Sweet.lollipop.top_down_hits.Clear(); //only want to clear if cleared theo database
}
Sweet.lollipop.clear_td();
dgv_TD_proteoforms.DataSource = null;
dgv_TD_proteoforms.Rows.Clear();
tb_tdProteoforms.Clear();
tb_unique_PFRs.Clear();
tb_tableFilter.Clear();
rtb_sequence.Clear();
if (clear_following)
{
for (int i = ((ProteoformSweet)MdiParent).forms.IndexOf(this) + 1; i < ((ProteoformSweet)MdiParent).forms.Count; i++)
{
ISweetForm sweet = ((ProteoformSweet)MdiParent).forms[i];
if (sweet as RawExperimentalComponents == null)
{
sweet.ClearListsTablesFigures(false);
}
}
}
}
public void ClearListsTablesFigures(bool clear_following)
{
foreach (var series in ct_IntensityRatio.Series)
{
series.Points.Clear();
}
foreach (var series in ct_LysineCount.Series)
{
series.Points.Clear();
}
dgv_RawExpNeuCodePairs.DataSource = null;
dgv_RawExpNeuCodePairs.Rows.Clear();
if (clear_following)
{
for (int i = this.MDIParent.forms.IndexOf(this) + 1; i < this.MDIParent.forms.Count; i++)
{
ISweetForm sweet = this.MDIParent.forms[i];
if (sweet as TheoreticalDatabase == null)
{
sweet.ClearListsTablesFigures(false);
}
}
}
}
public void ClearListsTablesFigures(bool clear_following)
{
SaveState.lollipop.clear_et();
et_histogram_from_unmod.Clear();
foreach (var series in ct_ET_Histogram.Series)
{
series.Points.Clear();
}
foreach (var series in ct_ET_peakList.Series)
{
series.Points.Clear();
}
dgv_ET_Relations.DataSource = null;
dgv_ET_Peak_List.DataSource = null;
dgv_ET_Relations.Rows.Clear();
dgv_ET_Peak_List.Rows.Clear();
if (clear_following)
{
for (int i = ((ProteoformSweet)MdiParent).forms.IndexOf(this) + 1; i < ((ProteoformSweet)MdiParent).forms.Count; i++)
{
ISweetForm sweet = ((ProteoformSweet)MdiParent).forms[i];
if (sweet as ExperimentExperimentComparison == null)
{
sweet.ClearListsTablesFigures(false);
}
}
}
}
public void ClearListsTablesFigures(bool clear_following)
{
//clear all save acceptance actions --> will re-add save actions from loaded actions if peak still exists
Sweet.save_actions.RemoveAll(x => x.StartsWith("accept ExperimentalExperimental") || x.StartsWith("unaccept ExperimentalExperimental"));
Sweet.lollipop.clear_ee();
foreach (var series in ct_EE_Histogram.Series) series.Points.Clear();
foreach (var series in ct_EE_peakList.Series) series.Points.Clear();
dgv_EE_Relations.DataSource = null;
dgv_EE_Peaks.DataSource = null;
dgv_EE_Relations.Rows.Clear();
dgv_EE_Peaks.Rows.Clear();
tb_max_accepted_fdr.Clear();
tb_peakTableFilter.Clear();
tb_relationTableFilter.Clear();
tb_totalAcceptedEERelations.Clear();
tb_TotalEEPeaks.Clear();
if (clear_following)
{
for (int i = (MDIParent).forms.IndexOf(this) + 1; i < (MDIParent).forms.Count; i++)
{
ISweetForm sweet = (MDIParent).forms[i];
if (sweet as TopDown == null)
{
sweet.ClearListsTablesFigures(false);
}
}
}
}
public void ClearListsTablesFigures(bool clear_following_forms)
{
Sweet.lollipop.raw_experimental_components.Clear();
Sweet.lollipop.raw_quantification_components.Clear();
foreach (InputFile f in Sweet.lollipop.input_files)
{
f.reader.Clear();
}
if (clear_following_forms)
{
ProteoformSweet parMDI = ((MainWindow)MDIHelpers.getParentWindow(this)).MDIParentControl;
for (int i = parMDI.forms.IndexOf(this) + 1; i < (parMDI).forms.Count; i++)
{
ISweetForm sweet = (parMDI).forms[i];
if (sweet as TopDown == null)
{
sweet.ClearListsTablesFigures(false);
}
}
}
dgv_fileList.Rows.Clear();
dgv_rawComponents.Rows.Clear();
dgv_chargeStates.Rows.Clear();
dgv_fileList.DataSource = null;
dgv_rawComponents.DataSource = null;
dgv_chargeStates.DataSource = null;
}
public void ClearListsTablesFigures(bool clear_following_forms)
{
Sweet.lollipop.raw_experimental_components.Clear();
Sweet.lollipop.raw_quantification_components.Clear();
foreach (InputFile f in Sweet.lollipop.input_files)
{
f.reader.Clear();
}
if (clear_following_forms)
{
for (int i = this.MDIParent.forms.IndexOf(this) + 1; i < (this.MDIParent).forms.Count; i++)
{
ISweetForm sweet = (this.MDIParent).forms[i];
if (sweet as TopDown == null)
{
sweet.ClearListsTablesFigures(false);
}
}
}
dgv_fileList.Rows.Clear();
dgv_rawComponents.Rows.Clear();
dgv_chargeStates.Rows.Clear();
dgv_fileList.DataSource = null;
dgv_rawComponents.DataSource = null;
dgv_chargeStates.DataSource = null;
}
public void ClearListsTablesFigures(bool clear_following)
{
SaveState.lollipop.clear_ee();
foreach (var series in ct_EE_Histogram.Series)
{
series.Points.Clear();
}
foreach (var series in ct_EE_peakList.Series)
{
series.Points.Clear();
}
dgv_EE_Relations.DataSource = null;
dgv_EE_Peaks.DataSource = null;
dgv_EE_Relations.Rows.Clear();
dgv_EE_Peaks.Rows.Clear();
if (clear_following)
{
for (int i = ((ProteoformSweet)MdiParent).forms.IndexOf(this) + 1; i < ((ProteoformSweet)MdiParent).forms.Count; i++)
{
ISweetForm sweet = ((ProteoformSweet)MdiParent).forms[i];
sweet.ClearListsTablesFigures(false);
}
}
}
private void showForm(UserControl form)
{
/*UClosingTabItem temp = new ClosingTabItem();
* temp.Title = form.GetType().Name;
* temp.Content = form;
* MDIContainer.Items.Add(temp);
* MDIContainer.SelectedItem = temp;*/
current_form = form as ISweetForm;
MDIContainer.SelectedIndex = ClosingTabItem.tabTable[form.GetType().Name];
}
private void showForm(UserControl form)
{
/*form.Show();
* form.WindowState = FormWindowState.Maximized;*/
(form as ITabbedMDI).MDIParent = this;
Window wdo = new Window
{
Title = "Proteo Display",
Content = new ProteoformSweet(),
MinHeight = 450,
MinWidth = 800
};
current_form = form as ISweetForm;
}
//Initial all tabs
private void showTabs(List <ISweetForm> forms)
{
foreach (UserControl uc in forms)
{
ClosingTabItem temp = new ClosingTabItem();
temp.Title = uc.GetType().Name;
temp.Content = uc;
//if (!uc.IsEnabled)
//{
//temp.Focusable = false;//cannot be selected
//}
MDIContainer.Items.Add(temp);
ClosingTabItem.tabTable.Add(uc.GetType().Name, MDIContainer.Items.Count - 1);//keep a record
current_form = uc as ISweetForm;
}
}
public void ClearListsTablesFigures(bool clear_following)
{
SaveState.lollipop.clear_all_families();
dgv_main.DataSource = null;
dgv_main.Rows.Clear();
dgv_proteoform_family_members.DataSource = null;
dgv_proteoform_family_members.Rows.Clear();
if (clear_following)
{
for (int i = ((ProteoformSweet)MdiParent).forms.IndexOf(this) + 1; i < ((ProteoformSweet)MdiParent).forms.Count; i++)
{
ISweetForm sweet = ((ProteoformSweet)MdiParent).forms[i];
sweet.ClearListsTablesFigures(false);
}
}
}
public void ClearListsTablesFigures(bool clear_following)
{
Sweet.lollipop.input_files.Clear();
Sweet.save_actions.Clear();
Sweet.loaded_actions.Clear();
Sweet.lollipop.results_folder = "";
//tb_resultsFolder.Text = "";
if (clear_following)
{
for (int i = this.MDIParent.forms.IndexOf(this) + 1; i < this.MDIParent.forms.Count; i++)
{
ISweetForm sweet = this.MDIParent.forms[i];
sweet.ClearListsTablesFigures(false);
sweet.FillTablesAndCharts();
}
}
FillTablesAndCharts();
}
public void ClearListsTablesFigures(bool clear_following)
{
if (clear_following)
{
for (int i = ((ProteoformSweet)MdiParent).forms.IndexOf(this) + 1; i < ((ProteoformSweet)MdiParent).forms.Count; i++)
{
ISweetForm sweet = ((ProteoformSweet)MdiParent).forms[i];
if (sweet as TheoreticalDatabase == null)
{
sweet.ClearListsTablesFigures(false);
}
}
}
SaveState.lollipop.clear_aggregation();
dgv_AcceptNeuCdLtProteoforms.DataSource = null;
dgv_AcceptNeuCdLtProteoforms.Rows.Clear();
}
public void ClearListsTablesFigures(bool clear_following)
{
dgv_Database.DataSource = null;
dgv_Database.Rows.Clear();
dgv_loadFiles.DataSource = null;
dgv_loadFiles.Rows.Clear();
dgv_unlocalizedModifications.DataSource = null;
dgv_unlocalizedModifications.Rows.Clear();
if (clear_following)
{
for (int i = ((ProteoformSweet)MdiParent).forms.IndexOf(this) + 1; i < ((ProteoformSweet)MdiParent).forms.Count; i++)
{
ISweetForm sweet = ((ProteoformSweet)MdiParent).forms[i];
sweet.ClearListsTablesFigures(false);
}
}
}
public void ClearListsTablesFigures(bool clear_following)
{
Sweet.lollipop.clear_all_families();
dgv_main.DataSource = null;
dgv_main.Rows.Clear();
dgv_proteoform_family_members.DataSource = null;
dgv_proteoform_family_members.Rows.Clear();
tb_tableFilter.Clear();
rtb_proteoformFamilyResults.Clear();
if (clear_following)
{
for (int i = (MDIParent).forms.IndexOf(this) + 1; i < (MDIParent).forms.Count; i++)
{
ISweetForm sweet = (MDIParent).forms[i];
sweet.ClearListsTablesFigures(false);
}
}
}
public void ClearListsTablesFigures(bool clear_following)
{
if (clear_following)
{
for (int i = (this.MDIParent).forms.IndexOf(this) + 1; i < (this.MDIParent).forms.Count; i++)
{
ISweetForm sweet = (this.MDIParent).forms[i];
sweet.ClearListsTablesFigures(false);
}
}
Sweet.lollipop.clear_aggregation();
dgv_AcceptNeuCdLtProteoforms.DataSource = null;
dgv_AcceptNeuCdLtProteoforms.Rows.Clear();
dgv_AggregatedProteoforms.DataSource = null;
dgv_AggregatedProteoforms.Rows.Clear();
tb_tableFilter.Clear();
tb_totalAggregatedProteoforms.Clear();
}
public void ClearListsTablesFigures(bool clear_following)
{
//clear all save acceptance actions --> will re-add save actions from loaded actions if peak still exists
Sweet.save_actions.RemoveAll(x => x.StartsWith("accept ExperimentalTheoretical") || x.StartsWith("unaccept ExperimentalTheoretical"));
//if in this round or others haven't ever shifted a mass, clear them all. Need to be careful because rerun the gamut whenever shift peaks.
if (!Sweet.lollipop.raw_experimental_components.Any(c => c.manual_mass_shift > 0))
{
Sweet.save_actions.RemoveAll(x => x.StartsWith("shift "));
}
Sweet.lollipop.clear_et();
et_histogram_from_unmod.Clear();
foreach (var series in ct_ET_Histogram.Series)
{
series.Points.Clear();
}
foreach (var series in ct_ET_peakList.Series)
{
series.Points.Clear();
}
dgv_ET_Relations.DataSource = null;
dgv_ET_Peak_List.DataSource = null;
dgv_ET_Relations.Rows.Clear();
dgv_ET_Peak_List.Rows.Clear();
tb_IdentifiedProteoforms.Clear();
tb_max_accepted_fdr.Clear();
tb_peakTableFilter.Clear();
tb_relationTableFilter.Clear();
tb_TotalPeaks.Clear();
if (clear_following)
{
for (int i = ((ProteoformSweet)this.MDIParent).forms.IndexOf(this) + 1; i < ((ProteoformSweet)this.MDIParent).forms.Count; i++)
{
ISweetForm sweet = ((ProteoformSweet)this.MDIParent).forms[i];
if (sweet as ExperimentExperimentComparison == null && sweet as TopDown == null)
{
sweet.ClearListsTablesFigures(false);
}
}
}
}
public void ClearListsTablesFigures(bool clear_following)
{
Sweet.lollipop.input_files.Clear();
Sweet.save_actions.Clear();
Sweet.loaded_actions.Clear();
Sweet.lollipop.results_folder = "";
//tb_resultsFolder.Text = "";
ProteoformSweet parMDI = ((MainWindow)MDIHelpers.getParentWindow(this)).MDIParentControl; //get the parent control of the form;
if (clear_following)
{
for (int i = parMDI.forms.IndexOf(this) + 1; i < parMDI.forms.Count; i++)
{
ISweetForm sweet = parMDI.forms[i];
sweet.ClearListsTablesFigures(false);
sweet.FillTablesAndCharts();
}
}
FillTablesAndCharts();
}
//Initial all tabs
private void showTabs(List <ISweetForm> forms)
{
foreach (UserControl uc in forms)
{
ClosingTabItem temp = new ClosingTabItem();
temp.Content = uc;
// Format the header name with spaces
string[] tokenizedName = Regex.Split(uc.GetType().Name, @"(?<!^)(?=[A-Z])");
string cleanedHeaderName = string.Join(" ", tokenizedName);
temp.Title = cleanedHeaderName;
//if (!uc.IsEnabled)
//{
//temp.Focusable = false;//cannot be selected
//}
MDIContainer.Items.Add(temp);
ClosingTabItem.tabTable.Add(uc.GetType().Name, MDIContainer.Items.Count - 1);//keep a record
current_form = uc as ISweetForm;
}
}
public void ClearListsTablesFigures(bool clear_following_forms)
{
if (clear_following_forms)
{
for (int i = ((ProteoformSweet)MdiParent).forms.IndexOf(this) + 1; i < ((ProteoformSweet)MdiParent).forms.Count; i++)
{
ISweetForm sweet = ((ProteoformSweet)MdiParent).forms[i];
if (sweet as TheoreticalDatabase == null)
{
sweet.ClearListsTablesFigures(false);
}
}
}
dgv_fileList.Rows.Clear();
dgv_rawComponents.Rows.Clear();
dgv_chargeStates.Rows.Clear();
dgv_fileList.DataSource = null;
dgv_rawComponents.DataSource = null;
dgv_chargeStates.DataSource = null;
}
public void ClearListsTablesFigures(bool clear_following)
{
dgv_Database.DataSource = null;
dgv_Database.Rows.Clear();
dgv_loadFiles.DataSource = null;
dgv_loadFiles.Rows.Clear();
dgv_unlocalizedModifications.DataSource = null;
dgv_unlocalizedModifications.Rows.Clear();
tb_modTableFilter.Clear();
tb_tableFilter.Clear();
tb_totalTheoreticalProteoforms.Clear();
if (clear_following)
{
for (int i = ((ProteoformSweet)MdiParent).forms.IndexOf(this) + 1; i < ((ProteoformSweet)MdiParent).forms.Count; i++)
{
ISweetForm sweet = ((ProteoformSweet)MdiParent).forms[i];
if (sweet as RawExperimentalComponents == null && (Sweet.lollipop.target_proteoform_community.experimental_proteoforms.Any(e => e.topdown_id) || sweet as AggregatedProteoforms == null))
{
sweet.ClearListsTablesFigures(false);
}
}
}
}
public void ClearListsTablesFigures(bool clear_following)
{
SaveState.lollipop.logIntensityHistogram.Clear();
SaveState.lollipop.logSelectIntensityHistogram.Clear();
SaveState.lollipop.satisfactoryProteoforms.Clear();
SaveState.lollipop.qVals.Clear();
SaveState.lollipop.quantifiedProteins.Clear();
SaveState.lollipop.inducedOrRepressedProteins.Clear();
SaveState.lollipop.goTermNumbers.Clear();
foreach (var series in ct_proteoformIntensities.Series)
{
series.Points.Clear();
}
foreach (var series in ct_relativeDifference.Series)
{
series.Points.Clear();
}
foreach (var series in ct_volcano_logFold_logP.Series)
{
series.Points.Clear();
}
dgv_goAnalysis.DataSource = null;
dgv_quantification_results.DataSource = null;
dgv_goAnalysis.Rows.Clear();
dgv_quantification_results.Rows.Clear();
if (clear_following)
{
for (int i = ((ProteoformSweet)MdiParent).forms.IndexOf(this) + 1; i < ((ProteoformSweet)MdiParent).forms.Count; i++)
{
ISweetForm sweet = ((ProteoformSweet)MdiParent).forms[i];
sweet.ClearListsTablesFigures(false);
}
}
}
private void showForm(Form form)
{
form.Show();
form.WindowState = FormWindowState.Maximized;
current_form = form as ISweetForm;
}
