public static int CompareTo(ISupplementaryDataItem item, ISupplementaryDataItem other)
{
if (other == null)
{
return(-1);
}
return(item.Chromosome.Index == other.Chromosome.Index ? item.Position.CompareTo(other.Position) : item.Chromosome.Index.CompareTo(other.Chromosome.Index));
}
public static void Trim(this ISupplementaryDataItem saItem)
{
if (saItem.RefAllele == null || saItem.AltAllele == null || saItem.Position < 0)
{
return;
}
(int start, string refAllele, string altAllele) = BiDirectionalTrimmer.Trim(saItem.Position, saItem.RefAllele, saItem.AltAllele);
saItem.Position = start;
saItem.RefAllele = refAllele;
saItem.AltAllele = altAllele;
}
public static void Trim(this ISupplementaryDataItem saItem)
{
if (saItem.RefAllele == null || saItem.AltAllele == null || saItem.Position < 0)
{
return;
}
var newAlleles = BiDirectionalTrimmer.Trim(saItem.Position, saItem.RefAllele, saItem.AltAllele);
saItem.Position = newAlleles.Start;
saItem.RefAllele = newAlleles.RefAllele;
saItem.AltAllele = newAlleles.AltAllele;
}
