public ParameterValue[] CreateIndividual(OriginData batchOriginData, IEnumerable <MoleculeOntogeny> moleculeOntogenies)
{
var originData = _originDataMapper.MapFrom(batchOriginData);
var individual = _individualFactory.CreateAndOptimizeFor(originData);
var individualProperties = _individualPropertiesMapper.MapFrom(individual);
var allIndividualParameters = individualProperties.ParameterValues.ToList();
allIndividualParameters.AddRange(_ontogenyFactorsRetriever.FactorsFor(originData, moleculeOntogenies));
return(allIndividualParameters.ToArray());
}
public Model.Individual MapFrom(Individual batchIndividual)
{
var batchOriginData = new OriginData
{
Species = batchIndividual.Species,
Population = batchIndividual.Population,
Gender = batchIndividual.Gender,
Age = batchIndividual.Age.GetValueOrDefault(double.NaN),
Height = batchIndividual.Height.GetValueOrDefault(double.NaN),
Weight = batchIndividual.Weight.GetValueOrDefault(double.NaN),
GestationalAge = batchIndividual.GestationalAge.GetValueOrDefault(double.NaN),
};
var originData = _originDataMapper.MapFrom(batchOriginData);
var individual = _individualFactory.CreateAndOptimizeFor(originData, batchIndividual.Seed).WithName("Individual");
batchIndividual.Enzymes.Each(enzyme => addMoleculeTo <IndividualEnzyme>(individual, enzyme));
batchIndividual.OtherProteins.Each(otherProtein => addMoleculeTo <IndividualOtherProtein>(individual, otherProtein));
batchIndividual.Transporters.Each(transporter =>
{
var individualTransporter = addMoleculeTo <IndividualTransporter>(individual, transporter);
individualTransporter.TransportType = EnumHelper.ParseValue <TransportType>(transporter.TransportType);
_batchLogger.AddDebug($"Transport type for transporter '{individualTransporter.Name}' is {individualTransporter.TransportType}");
});
return(individual);
}
private Model.OriginData originDataFrom(PopulationSettings batchPopulationSettings)
{
//create default individual based on given data
var batchOriginData = new OriginData
{
Species = batchPopulationSettings.Species,
Population = batchPopulationSettings.Population
};
batchPopulationSettings.AllCalculationMethods.KeyValues.Each(kv => batchOriginData.AddCalculationMethod(kv.Key, kv.Value));
return(_originDataMapper.MapFrom(batchOriginData));
}