public static void Read(INetworkData ndata, string outFolder, ProcessInfo processInfo)
{
ReadMatrixDataInto(ndata, Path.Combine(outFolder, "networks.txt"), processInfo);
foreach (var netAttr in ndata.GetStringColumn("guid").Zip(ndata.GetStringColumn("name"), (guid, name) => new { guid, name }))
{
var guid = Guid.Parse(netAttr.guid);
var nodeTable = PerseusFactory.CreateDataWithAnnotationColumns();
var edgeTable = PerseusFactory.CreateDataWithAnnotationColumns();
ReadMatrixDataInto(nodeTable, Path.Combine(outFolder, $"{guid}_nodes.txt"), processInfo);
ReadMatrixDataInto(edgeTable, Path.Combine(outFolder, $"{guid}_edges.txt"), processInfo);
var graph = new Graph();
var nodeIndex = new Dictionary <INode, int>();
var nameToNode = new Dictionary <string, INode>();
var nodeColumn = nodeTable.GetStringColumn("node");
for (int row = 0; row < nodeTable.RowCount; row++)
{
var node = graph.AddNode();
nodeIndex[node] = row;
nameToNode[nodeColumn[row]] = node;
}
var sourceColumn = edgeTable.GetStringColumn("source");
var targetColumn = edgeTable.GetStringColumn("target");
var edgeIndex = new Dictionary <IEdge, int>();
for (int row = 0; row < edgeTable.RowCount; row++)
{
var source = nameToNode[sourceColumn[row]];
var target = nameToNode[targetColumn[row]];
var edge = graph.AddEdge(source, target);
edgeIndex[edge] = row;
}
ndata.AddNetworks(new NetworkInfo(graph, nodeTable, nodeIndex, edgeTable, edgeIndex, netAttr.name, guid));
}
ReadMatrixDataInto(ndata, Path.Combine(outFolder, "networks.txt"), processInfo);
}
