public CromwellOnAzureEnvironment(ILoggerFactory loggerFactory, IAzureStorage storage, ICromwellApiClient cromwellApiClient)
{
logger = loggerFactory.CreateLogger <AzureStorage>();
this.storage = storage;
this.cromwellApiClient = cromwellApiClient;
logger.LogInformation($"Cromwell URL: {cromwellApiClient.GetUrl()}");
}
public Lab(ILoggerFactory loggerFactory, string name, IAzureStorage storage, ICromwellApiClient cromwellApiClient)
{
logger = loggerFactory.CreateLogger <AzureStorage>();
Name = name;
this.storage = storage;
this.cromwellApiClient = cromwellApiClient;
logger.LogInformation($"Cromwell URL: {cromwellApiClient.GetUrl()}");
}
private static async Task <(string newTriggerName, Workflow newTriggerContent)> ProcessAbortRequestAsync(Guid workflowId, ICromwellApiClient cromwellApiClient)
{
string newTriggerName = null;
Workflow newTriggerContent = null;
var loggerFactory = new Mock <ILoggerFactory>();
var azureStorage = new Mock <IAzureStorage>();
var repository = new Mock <IRepository <TesTask> >();
loggerFactory
.Setup(f => f.CreateLogger(It.IsAny <string>()))
.Returns(new Mock <ILogger>().Object);
azureStorage
.Setup(az => az.GetWorkflowsByStateAsync(WorkflowState.Abort))
.Returns(Task.FromResult(new[] {
new TriggerFile {
Uri = $"http://tempuri.org/workflows/abort/{workflowId}.json",
ContainerName = "workflows",
Name = $"abort/{workflowId}.json",
LastModified = DateTimeOffset.UtcNow
}
}.AsEnumerable()));
azureStorage
.Setup(az => az.DownloadBlobTextAsync(It.IsAny <string>(), $"abort/{workflowId}.json"))
.Returns(Task.FromResult(string.Empty));
azureStorage
.Setup(az => az.UploadFileTextAsync(It.IsAny <string>(), "workflows", It.IsAny <string>()))
.Callback((string content, string container, string blobName) => {
newTriggerName = blobName;
newTriggerContent = content is not null ? JsonConvert.DeserializeObject <Workflow>(content) : null;
});
var cromwellOnAzureEnvironment = new CromwellOnAzureEnvironment(loggerFactory.Object, azureStorage.Object, cromwellApiClient, repository.Object, Enumerable.Repeat(azureStorage.Object, 1));
await cromwellOnAzureEnvironment.ProcessAndAbortWorkflowsAsync();
return(newTriggerName, newTriggerContent);
}
