protected override void Context()
{
_compound = new Compound();
_view = A.Fake <ICompoundProcessesView>();
_commandRegister = A.Fake <ICommandCollector>();
A.CallTo(() => _view.TreeView).Returns(A.Fake <IUxTreeView>());
_compoundProcessTask = A.Fake <ICompoundProcessTask>();
_partialProcessNodeMapper = A.Fake <IPartialProcessToTreeNodeMapper>();
_compoundProcessPresenter = A.Fake <ICompoundProcessPresenter>();
_compoundEnzymaticProcessPresenter = A.Fake <IEnzymaticCompoundProcessPresenter>();
_treeNodeFactory = new TreeNodeFactoryForSpecs();
_contextMenuFactory = A.Fake <ITreeNodeContextMenuFactory>();
_entityTask = A.Fake <IEntityTask>();
_partialProcessesNode = new RootNode(PKSimRootNodeTypes.CompoundMetabolizingEnzymes);
_representationInfoRepository = A.Fake <IRepresentationInfoRepository>();
_compoundParameterNodeTypeToCompoundParameterGroupPresenterMapper = A.Fake <ICompoundParameterNodeTypeToCompoundParameterGroupPresenterMapper>();
_dialogCreator = A.Fake <IDialogCreator>();
_noItemInSelectionPresenter = A.Fake <INoItemInSelectionPresenter>();
sut = new CompoundProcessesPresenter(_view, _compoundProcessTask, _partialProcessNodeMapper, _treeNodeFactory,
_contextMenuFactory, _compoundProcessPresenter, _entityTask, _dialogCreator, _noItemInSelectionPresenter,
_compoundParameterNodeTypeToCompoundParameterGroupPresenterMapper, _compoundEnzymaticProcessPresenter,
new PartialProcessToRootNodeTypeMapper(), new SystemicProcessToRootNodeTypeMapper());
sut.InitializeWith(_commandRegister);
A.CallTo(() => _view.TreeView.NodeById(PKSimRootNodeTypes.CompoundMetabolizingEnzymes.Id)).Returns(_partialProcessesNode);
}
public CreateInductionProcessPresenter(ICreatePartialProcessView view, ICompoundProcessTask compoundProcessTask, IPartialProcessToPartialProcessDTOMapper partialProcessMapper, IParametersByGroupPresenter parameterEditPresenter, ICompoundProcessToCompoundProcessDTOMapper processMapper, IUsedMoleculeRepository usedMoleculeRepository, ISpeciesRepository speciesRepository)
: base(view, compoundProcessTask, partialProcessMapper, parameterEditPresenter, processMapper, usedMoleculeRepository, speciesRepository)
{
view.SetIcon(ApplicationIcons.Induction);
view.MoleculeCaption = PKSimConstants.UI.AffectedEnzymeOrTransporter;
view.Caption = PKSimConstants.UI.Induction;
}
public CompoundProcessesPresenter(ICompoundProcessesView view,
ICompoundProcessTask compoundProcessTask,
IPartialProcessToTreeNodeMapper partialProcessNodeMapper,
ITreeNodeFactory treeNodeFactory,
ITreeNodeContextMenuFactory contextMenuFactory,
ICompoundProcessPresenter compoundProcessPresenter,
IEntityTask entityTask, IDialogCreator dialogCreator, INoItemInSelectionPresenter noItemInSelectionPresenter,
ICompoundParameterNodeTypeToCompoundParameterGroupPresenterMapper compoundParameterNodeTypeToCompoundParameterGroupPresenterMapper,
IEnzymaticCompoundProcessPresenter compoundEnzymaticProcessPresenter,
IPartialProcessToRootNodeTypeMapper partialProcessToRootNodeTypeMapper,
ISystemicProcessToRootNodeTypeMapper systemicProcessToRootNodeTypeMapper)
: base(view)
{
_compoundProcessTask = compoundProcessTask;
_partialProcessNodeMapper = partialProcessNodeMapper;
_treeNodeFactory = treeNodeFactory;
_contextMenuFactory = contextMenuFactory;
_compoundProcessPresenter = compoundProcessPresenter;
_entityTask = entityTask;
_dialogCreator = dialogCreator;
_noItemInSelectionPresenter = noItemInSelectionPresenter;
_noItemInSelectionPresenter.Description = PKSimConstants.Information.CompoundProcessesInfo;
_compoundParameterNodeTypeToCompoundParameterGroupPresenterMapper = compoundParameterNodeTypeToCompoundParameterGroupPresenterMapper;
_compoundEnzymaticProcessPresenter = compoundEnzymaticProcessPresenter;
_parameterPresenterCache = new Cache <CompoundParameterNodeType, ICompoundParameterGroupPresenter>();
_partialProcessToRootNodeTypeMapper = partialProcessToRootNodeTypeMapper;
_systemicProcessToRootNodeTypeMapper = systemicProcessToRootNodeTypeMapper;
AddSubPresenters(_compoundProcessPresenter, _compoundEnzymaticProcessPresenter, _noItemInSelectionPresenter);
}
public CompoundProcessPresenter(ICompoundProcessView view, IParametersByGroupPresenter parametersPresenter,
IEntityTask entityTask, ISpeciesRepository speciesRepository,
IRepresentationInfoRepository representationInfoRepository,
ICompoundProcessToCompoundProcessDTOMapper compoundProcessDTOMapper,
ICompoundProcessTask compoundProcessTask)
: base(view, parametersPresenter, entityTask, speciesRepository, representationInfoRepository, compoundProcessDTOMapper, compoundProcessTask)
{
}
protected CreateProcessPresenter(TView view, IParametersByGroupPresenter parametersPresenter, ICompoundProcessToCompoundProcessDTOMapper processMapper,
ICompoundProcessTask compoundProcessTask, ISpeciesRepository speciesRepository)
: base(view)
{
_parametersPresenter = parametersPresenter;
_processMapper = processMapper;
_compoundProcessTask = compoundProcessTask;
_speciesRepository = speciesRepository;
_view.AddParametersView(_parametersPresenter.View);
_editCommands = new PKSimMacroCommand();
}
public EnzymaticCompoundProcessPresenter(
IEnzymaticCompoundProcessView view,
IParametersByGroupPresenter parametersPresenter,
IEntityTask entityTask, ISpeciesRepository speciesRepository,
IRepresentationInfoRepository representationInfoRepository,
IEnzymaticProcessToEnzymaticProcessDTOMapper mapper,
IBuildingBlockRepository buildingBlockRepository,
ICompoundProcessTask processTask)
: base(view, parametersPresenter, entityTask, speciesRepository, representationInfoRepository, mapper, processTask)
{
_buildingBlockRepository = buildingBlockRepository;
}
protected CreatePartialProcessPresenter(TView view,
ICompoundProcessTask compoundProcessTask,
IPartialProcessToPartialProcessDTOMapper partialProcessMapper,
IParametersByGroupPresenter parameterEditPresenter,
ICompoundProcessToCompoundProcessDTOMapper processMapper,
IUsedMoleculeRepository usedMoleculeRepository, ISpeciesRepository speciesRepository)
: base(view, parameterEditPresenter, processMapper, compoundProcessTask, speciesRepository)
{
_partialProcessMapper = partialProcessMapper;
_view.AllAvailableProteins = usedMoleculeRepository.All();
DefaultMoleculeName = string.Empty;
}
protected override void Context()
{
_enzymaticProcessToEnzymaticProcessDTOMapper = A.Fake <IEnzymaticProcessToEnzymaticProcessDTOMapper>();
_view = A.Fake <IEnzymaticCompoundProcessView>();
_buildingBlockRepository = A.Fake <IBuildingBlockRepository>();
_compoundProcessTask = A.Fake <ICompoundProcessTask>();
sut = new EnzymaticCompoundProcessPresenter(
_view, A.Fake <IParametersByGroupPresenter>(), A.Fake <IEntityTask>(), A.Fake <ISpeciesRepository>(), A.Fake <IRepresentationInfoRepository>(),
_enzymaticProcessToEnzymaticProcessDTOMapper,
_buildingBlockRepository,
_compoundProcessTask);
}
protected override void Context()
{
base.Context();
_view = A.Fake <ICreateEnzymaticProcessView>();
_compoundProcessTask = A.Fake <ICompoundProcessTask>();
_buildingBlockRepository = A.Fake <IBuildingBlockRepository>();
_processMapper = A.Fake <ICompoundProcessToCompoundProcessDTOMapper>();
_partialProcessMapper = A.Fake <IPartialProcessToPartialProcessDTOMapper>();
_parameterPresenter = A.Fake <IParametersByGroupPresenter>();
_usedMOleculeRepository = A.Fake <IUsedMoleculeRepository>();
_speciesRepository = A.Fake <ISpeciesRepository>();
sut = new CreateEnzymaticProcessPresenter(_view, _compoundProcessTask, _processMapper, _partialProcessMapper, _parameterPresenter, _usedMOleculeRepository, _speciesRepository, _buildingBlockRepository);
}
public CompoundMapper(ICompoundFactory compoundFactory, ICompoundProcessRepository compoundProcessRepository,
IBatchLogger batchLogger, ICloner cloner,
ICompoundCalculationMethodCategoryRepository calculationMethodCategoryRepository,
ICalculationMethodRepository calculationMethodRepository, ICompoundProcessTask compoundProcessTask, ISpeciesRepository speciesRepository)
{
_compoundFactory = compoundFactory;
_compoundProcessRepository = compoundProcessRepository;
_batchLogger = batchLogger;
_cloner = cloner;
_calculationMethodCategoryRepository = calculationMethodCategoryRepository;
_calculationMethodRepository = calculationMethodRepository;
_compoundProcessTask = compoundProcessTask;
_speciesRepository = speciesRepository;
}
public CreateEnzymaticProcessPresenter(
ICreateEnzymaticProcessView view,
ICompoundProcessTask compoundProcessTask,
ICompoundProcessToCompoundProcessDTOMapper processMapper,
IPartialProcessToPartialProcessDTOMapper partialProcessMapper,
IParametersByGroupPresenter parameterEditPresenter,
IUsedMoleculeRepository usedMoleculeRepository,
ISpeciesRepository speciesRepository,
IBuildingBlockRepository buildingBlockRepository)
: base(view, compoundProcessTask, partialProcessMapper, parameterEditPresenter, processMapper, usedMoleculeRepository, speciesRepository)
{
view.SetIcon(ApplicationIcons.Metabolite);
view.Caption = PKSimConstants.UI.CreateMetabolizingEnzyme;
view.MoleculeCaption = PKSimConstants.UI.MetabolizingEnzyme;
_buildingBlockRepository = buildingBlockRepository;
}
public CompoundProcessMapper(
ParameterMapper parameterMapper,
IRepresentationInfoRepository representationInfoRepository,
ICompoundProcessRepository compoundProcessRepository,
ICloner cloner,
ISpeciesRepository speciesRepository,
ICompoundProcessTask compoundProcessTask,
IOSPSuiteLogger logger
) : base(parameterMapper)
{
_representationInfoRepository = representationInfoRepository;
_compoundProcessRepository = compoundProcessRepository;
_cloner = cloner;
_speciesRepository = speciesRepository;
_compoundProcessTask = compoundProcessTask;
_logger = logger;
}
protected BaseCompoundProcessPresenter(TView view,
IParametersByGroupPresenter parametersPresenter,
IEntityTask entityTask, ISpeciesRepository speciesRepository,
IRepresentationInfoRepository representationInfoRepository,
IMapper <TCompoundProcess, TProcessDTO> compoundProcessDTOMapper,
ICompoundProcessTask compoundProcessTask)
: base(view)
{
_parametersPresenter = parametersPresenter;
_entityTask = entityTask;
_speciesRepository = speciesRepository;
_representationInfoRepository = representationInfoRepository;
_compoundProcessDTOMapper = compoundProcessDTOMapper;
_processTask = compoundProcessTask;
_view.SetParametersView(_parametersPresenter.View);
AddSubPresenters(_parametersPresenter);
}
protected override Task Context()
{
_parameterMapper = A.Fake <ParameterMapper>();
_representationInfoRepository = A.Fake <IRepresentationInfoRepository>();
_compoundProcessRepository = A.Fake <ICompoundProcessRepository>();
_cloner = A.Fake <ICloner>();
_speciesRepository = A.Fake <ISpeciesRepository>();
_compoundProcessTask = A.Fake <ICompoundProcessTask>();
_logger = A.Fake <IOSPSuiteLogger>();
sut = new CompoundProcessMapper(_parameterMapper, _representationInfoRepository, _compoundProcessRepository, _cloner, _speciesRepository, _compoundProcessTask, _logger);
_enzymaticProcess = new EnzymaticProcess
{
Name = "Enzymatic Process",
Description = "Process description",
InternalName = "A",
DataSource = "B",
MetaboliteName = "Meta"
};
//Same description as DB
A.CallTo(() => _representationInfoRepository.DescriptionFor(RepresentationObjectType.PROCESS, _enzymaticProcess.InternalName)).Returns(_enzymaticProcess.Description);
_enzymaticProcessWithSpecies = new EnzymaticProcessWithSpecies
{
Name = "Enzymatic process with species",
Description = "toto",
Species = new Species().WithName("Human"),
InternalName = "C",
DataSource = "D",
};
A.CallTo(() => _representationInfoRepository.DescriptionFor(RepresentationObjectType.PROCESS, _enzymaticProcessWithSpecies.InternalName)).Returns("Process description");
return(Task.FromResult(true));
}
public CreateSpecificBindingPartialProcessPresenter(ICreatePartialProcessView view, ICompoundProcessTask compoundProcessTask, ICompoundProcessToCompoundProcessDTOMapper processMapper, IPartialProcessToPartialProcessDTOMapper partialProcessMapper, IParametersByGroupPresenter parameterEditPresenter, IUsedMoleculeRepository usedMoleculeRepository, ISpeciesRepository speciesRepository)
: base(view, compoundProcessTask, partialProcessMapper, parameterEditPresenter, processMapper, usedMoleculeRepository, speciesRepository)
{
view.SetIcon(ApplicationIcons.SpecificBinding);
view.MoleculeCaption = PKSimConstants.UI.ProteinBindingPartner;
view.Caption = PKSimConstants.UI.CreateProteinBindingPartner;
}
public CreateSystemicProcessPresenter(ICreateSystemicProcessView view, IParametersByGroupPresenter parameterEditPresenter,
ICompoundProcessToCompoundProcessDTOMapper processMapper, ICompoundProcessTask compoundProcessTask,
ISpeciesRepository speciesRepository, ISystemicProcessToSystemicProcessDTOMapper systemicProcessDTOMapper) : base(view, parameterEditPresenter, processMapper, compoundProcessTask, speciesRepository)
{
_systemicProcessDTOMapper = systemicProcessDTOMapper;
}
public CreateTransportPartialProcessPresenter(ICreatePartialProcessView view, ICompoundProcessTask compoundProcessTask, ICompoundProcessToCompoundProcessDTOMapper processMapper, IPartialProcessToPartialProcessDTOMapper partialProcessMapper, IParametersByGroupPresenter parameterEditPresenter, IUsedMoleculeRepository usedMoleculeRepository, ISpeciesRepository speciesRepository)
: base(view, compoundProcessTask, partialProcessMapper, parameterEditPresenter, processMapper, usedMoleculeRepository, speciesRepository)
{
view.ApplicationIcon = ApplicationIcons.Transporter;
view.MoleculeCaption = PKSimConstants.UI.TransportProteins;
view.Caption = PKSimConstants.UI.CreateTransportProtein;
}
