public void Compute(IMoBiSimulation simulation)
{
var buildConfiguration = _buildConfigurationFactory.CreateFromReferencesUsedIn(simulation.MoBiBuildConfiguration);
buildConfiguration.ShowProgress = false;
_logger.AddDebug("Creating new simulation from loaded building blocks");
var results = _modelConstructor.CreateModelFrom(buildConfiguration, "BatchRun");
if (results.IsInvalid)
{
_logger.AddWarning(results.ValidationResult.Messages.SelectMany(x => x.Details).ToString());
}
var newSimulation = new MoBiSimulation
{
BuildConfiguration = buildConfiguration,
Model = results.Model,
Id = "Sim"
};
_context.Register(newSimulation);
_logger.AddDebug("Running simulation");
_simModelManager.RunSimulation(newSimulation);
}
public void FormulaParameter_InitialAssignmentCreationTest()
{
var simulation = _simulationFactory.Create();
simulation.MoBiBuildConfiguration.SimulationSettings = _simulationSettingsFactory.CreateDefault();
simulation.MoBiBuildConfiguration.Observers = IoC.Resolve <IMoBiContext>().Create <IObserverBuildingBlock>();
simulation.MoBiBuildConfiguration.SpatialStructure = _moBiProject.SpatialStructureCollection.FirstOrDefault();
simulation.MoBiBuildConfiguration.ParameterStartValues = _moBiProject.ParametersStartValueBlockCollection.FirstOrDefault();
simulation.MoBiBuildConfiguration.Reactions = _moBiProject.ReactionBlockCollection.FirstOrDefault();
simulation.MoBiBuildConfiguration.Molecules = _moBiProject.MoleculeBlockCollection.FirstOrDefault();
simulation.MoBiBuildConfiguration.PassiveTransports = _moBiProject.PassiveTransportCollection.FirstOrDefault();
simulation.MoBiBuildConfiguration.MoleculeStartValues = _moBiProject.MoleculeStartValueBlockCollection.FirstOrDefault();
simulation.MoBiBuildConfiguration.EventGroups = _moBiProject.EventBlockCollection.FirstOrDefault();
var buildConfiguration = _buildConfigurationFactory.CreateFromReferencesUsedIn(simulation.MoBiBuildConfiguration);
var name = Guid.NewGuid().ToString();
var result = _modelConstructor.CreateModelFrom(buildConfiguration, name);
result.State.ShouldBeEqualTo(ValidationState.Valid);
}
private IMoBiBuildConfiguration createBuildConfigurationUsingTemplates(IMoBiSimulation simulation, IBuildingBlock templateBuildingBlock)
{
return(_buildConfigurationFactory.CreateFromReferencesUsedIn(simulation.MoBiBuildConfiguration, templateBuildingBlock));
}