public void ToString_substitution()
{
var startPosOff = new PositionOffset(93, 0, "93", false);
var endPosOff = new PositionOffset(93, 0, "93", false);
var hgvsc = new HgvscNotation("G", "T", "NM_004006.1", GenomicChange.Substitution, startPosOff, endPosOff, true);
Assert.Equal("NM_004006.1:c.93G>T", hgvsc.ToString());
}
public void ToString_insertion()
{
var startPosOff = new PositionOffset(5756, 0, "5756", false);
var endPosOff = new PositionOffset(5757, 0, "5757", false);
var hgvsc = new HgvscNotation("", "AGG", "NM_012232.1", GenomicChange.Insertion, startPosOff, endPosOff, true);
Assert.Equal("NM_012232.1:c.5756_5757insAGG", hgvsc.ToString());
}
public void ToString_one_base_duplication()
{
var startPosOff = new PositionOffset(7, 0, "7", false);
var endPosOff = new PositionOffset(7, 0, "7", false);
var hgvsc = new HgvscNotation("T", "T", "NM_012232.1", GenomicChange.Duplication, startPosOff, endPosOff, true);
Assert.Equal("NM_012232.1:c.7dupT", hgvsc.ToString());
}
public void ToString_multi_base_duplication()
{
var startPosOff = new PositionOffset(6, 0, "6", false);
var endPosOff = new PositionOffset(8, 0, "8", false);
var hgvsc = new HgvscNotation("TGC", "TGC", "NM_012232.1", GenomicChange.Duplication, startPosOff, endPosOff, true);
Assert.Equal("NM_012232.1:c.6_8dupTGC", hgvsc.ToString());
}
public void ToString_deletion_multiple_base()
{
var startPosOff = new PositionOffset(19, 0, "19", false);
var endPosOff = new PositionOffset(21, 0, "21", false);
var hgvsc = new HgvscNotation("TGC", "", "NM_012232.1", GenomicChange.Deletion, startPosOff, endPosOff, true);
Assert.Equal("NM_012232.1:c.19_21del", hgvsc.ToString());
}
