/// <summary>
/// update interface tables
/// </summary>
/// <param name="dbName"></param>
public void UpdateHomoGroupInterfaces(Dictionary <int, string[]> updateGroupHash)
{
if (!File.Exists(ProtCidSettings.dirSettings.protcidDbPath))
{
ProtCidSettings.progressInfo.progStrQueue.Enqueue("Database not exist. Please check the path, try it again.");
ProtCidSettings.progressInfo.threadAborted = true;
return;
}
ProtCidSettings.progressInfo.ResetCurrentProgressInfo();
// build X-ray crystal and detect chain contacts
ProtCidSettings.progressInfo.ResetCurrentProgressInfo();
ProtCidSettings.progressInfo.progStrQueue.Enqueue("Update interfaces in a crystal from XML coordinate files.");
GroupInterfacesRetriever homoGroupInterfaces = new GroupInterfacesRetriever();
List <int> updateGroupList = new List <int> (updateGroupHash.Keys);
Dictionary <int, Dictionary <string, List <string> > > groupEntryHash = GetGroupEntries(updateGroupList.ToArray());
if (groupEntryHash == null || groupEntryHash.Count == 0)
{
return;
}
homoGroupInterfaces.UpdateGroupInterfacesCompDb(groupEntryHash, updateGroupHash);
ProtCidSettings.progressInfo.progStrQueue.Enqueue("Done.");
// finish
ProtCidSettings.progressInfo.progStrQueue.Enqueue("Database created. ");
}
/// <summary>
/// create tables for the specific database
/// </summary>
/// <param name="dbName"></param>
public void DetectHomoGroupInterfaces(int[] updateGroups)
{
if (!File.Exists(ProtCidSettings.dirSettings.protcidDbPath))
{
ProtCidSettings.progressInfo.progStrQueue.Enqueue("Database not exist. Please check the path, try it again.");
ProtCidSettings.progressInfo.threadAborted = true;
return;
}
ProtCidSettings.progressInfo.ResetCurrentProgressInfo();
if (modifyType == "build")
{
ProtCidSettings.progressInfo.progStrQueue.Enqueue("Create database tables from schema file.");
try
{
// InitializeFamilyTablesInDb();
// InitializeResiduesContactsTables();
// dbCreator.CreateTablesFromFile (ProtCidSettings.applicationStartPath + "\\dbSchema\\" + ProtCidSettings.dataType + "InterfaceDbSchema.txt");
}
catch (Exception ex)
{
ProtCidSettings.progressInfo.progStrQueue.Enqueue(ex.Message);
ProtCidSettings.progressInfo.threadAborted = true;
return;
}
ProtCidSettings.progressInfo.progStrQueue.Enqueue("Done.");
}
// build X-ray crystal and detect chain contacts
ProtCidSettings.progressInfo.ResetCurrentProgressInfo();
ProtCidSettings.progressInfo.progStrQueue.Enqueue("Detect interfaces in a crystal from XML coordinate files.");
GroupInterfacesRetriever homoGroupInterfaces = new GroupInterfacesRetriever();
Dictionary <int, Dictionary <string, List <string> > > groupEntryHash = GetGroupEntries(updateGroups);
if (groupEntryHash == null || groupEntryHash.Count == 0)
{
return;
}
homoGroupInterfaces.DetectGroupInterfacesCompDb(groupEntryHash);
ProtCidSettings.progressInfo.progStrQueue.Enqueue("Done.");
// finish
ProtCidSettings.progressInfo.progStrQueue.Enqueue("Database created. ");
}