public void test_construct_genename_from_others()
{
Tuple <string, string> gene_name = new Tuple <string, string>("primary", "ABC");
GeneName g = new GeneName(new List <Tuple <string, string> > {
gene_name
});
Tuple <string, string> ordered_name = new Tuple <string, string>("ordered locus", "ABCD");
GeneName h = new GeneName(new List <Tuple <string, string> > {
ordered_name
});
Tuple <string, string> ordered_name2 = new Tuple <string, string>("ordered locus", "ABCD2");
GeneName i = new GeneName(new List <Tuple <string, string> > {
ordered_name2
});
Tuple <string, string> gene_name2 = new Tuple <string, string>("primary", "ABCDE");
GeneName j = new GeneName(new List <Tuple <string, string> > {
gene_name2
});
List <GeneName> gene_names = new List <GeneName> {
g, h, i, j
};
GeneName k = new GeneName(gene_names);
Assert.AreEqual(gene_name.Item2, k.primary);
Assert.AreEqual(ordered_name.Item2, k.ordered_locus);
}
public void test_construct_genename()
{
Tuple<string, string> gene_name = new Tuple<string, string>("primary", "ABC");
Tuple<string, string> ordered_name = new Tuple<string, string>("ordered locus", "ABCD");
Tuple<string, string> ordered_name2 = new Tuple<string, string>("ordered locus", "ABCD2");
Tuple<string, string> gene_name2 = new Tuple<string, string>("primary", "ABCDE");
List<Tuple<string, string>> gene_names = new List<Tuple<string, string>> { gene_name, ordered_name, ordered_name2, gene_name2 };
GeneName g = new GeneName(gene_names);
Assert.AreEqual(gene_name.Item2, g.primary);
Assert.AreEqual(ordered_name.Item2, g.ordered_locus);
//Getting preferred name
Assert.AreEqual(gene_name.Item2, g.get_prefered_name(Lollipop.gene_name_labels[0]));
Assert.AreEqual(ordered_name.Item2, g.get_prefered_name(Lollipop.gene_name_labels[1]));
Assert.AreEqual(gene_name.Item2, g.get_prefered_name(""));
}
public int CompareTo(IAnnotatedGene other)
{
return(GeneName.CompareTo(other.GeneName));
}
