public void ValidateFVQSPContains()
{
FileVirtualQualitativeSequenceProvider provObj =
GetVirtualSequenceProvider();
IQualitativeSequence seqObj =
new QualitativeSequence(Alphabets.DNA, FastQFormatType.Illumina, "AGGCT");
provObj.Add(seqObj[0]);
provObj.Add(seqObj[1]);
Assert.IsTrue(provObj.Contains(seqObj[0]));
ApplicationLog.WriteLine(@"FVQSP Bvt : Successfully validated the Contains() method");
Console.WriteLine(@"FVQSP Bvt : Successfully validated the Contains() method");
}
public void ValidateFVQSPRemoveAt()
{
FileVirtualQualitativeSequenceProvider provObj =
GetVirtualSequenceProvider();
IQualitativeSequence seqObj =
new QualitativeSequence(Alphabets.DNA, FastQFormatType.Illumina, "AGGCT");
provObj.Add(seqObj[0]);
provObj.Add(seqObj[1]);
provObj.Add(seqObj[2]);
provObj.RemoveAt(0);
Assert.AreEqual(seqObj[1].Name, provObj.GetISequenceItem(0).Name);
ApplicationLog.WriteLine(@"FVQSP Bvt : Successfully validated the RemoveAt() method");
Console.WriteLine(@"FVQSP Bvt : Successfully validated the RemoveAt() method");
}
public void ValidateFVQSPReplaceRange()
{
FileVirtualQualitativeSequenceProvider provObj =
GetVirtualSequenceProvider();
IQualitativeSequence seqObj =
new QualitativeSequence(Alphabets.DNA, FastQFormatType.Illumina, "AGGC");
provObj.Add(seqObj[0]);
provObj.Add(seqObj[1]);
provObj.ReplaceRange(provObj.Count - 2, "GC");
Assert.AreEqual(seqObj[2].Name, provObj[provObj.Count - 2].Name);
Assert.AreEqual(seqObj[3].Name, provObj[provObj.Count - 1].Name);
ApplicationLog.WriteLine(@"FVQSP Bvt : Successfully validated the ReplaceRange() method");
Console.WriteLine(@"FVQSP Bvt : Successfully validated the ReplaceRange() method");
}
public void ValidateFVQSPReplaceChar()
{
FileVirtualQualitativeSequenceProvider provObj =
GetVirtualSequenceProvider();
IQualitativeSequence seqObj =
new QualitativeSequence(Alphabets.DNA, FastQFormatType.Illumina, "AGGCT");
provObj.Add(seqObj[0]);
provObj.Add(seqObj[1]);
provObj.Add(seqObj[2]);
provObj.Add(seqObj[3]);
provObj.Replace(0, 'C');
Assert.AreEqual(seqObj[3], provObj[0]);
ApplicationLog.WriteLine(
"FVQSP Bvt : Successfully validated the Replace(int, char) method");
Console.WriteLine(
"FVQSP Bvt : Successfully validated the Replace(int, char) method");
}
public void ValidateFVQSPCopyToByteArray()
{
FileVirtualQualitativeSequenceProvider provObj =
GetVirtualSequenceProvider();
IQualitativeSequence seqObj =
new QualitativeSequence(Alphabets.DNA, FastQFormatType.Illumina, "AGGCT");
provObj.Add(seqObj[0]);
byte[] byteArray = new byte[provObj.Count];
provObj.CopyTo(byteArray, 0);
Assert.AreEqual("A", seqObj[0].Symbol.ToString());
ApplicationLog.WriteLine("FVQSP Bvt : Successfully validated the CopyTo() method");
Console.WriteLine("FVQSP Bvt : Successfully validated the CopyTo() method");
}
public void ValidateFVQSPCopyTo()
{
FileVirtualQualitativeSequenceProvider provObj =
GetVirtualSequenceProvider();
IQualitativeSequence seqObj =
new QualitativeSequence(Alphabets.DNA, FastQFormatType.Illumina, "AGGCT");
provObj.Add(seqObj[0]);
ISequenceItem[] aryObj = new ISequenceItem[provObj.Count];
provObj.CopyTo(aryObj, 0);
Assert.AreEqual(aryObj[provObj.Count - 1].Name, seqObj[0].Name);
ApplicationLog.WriteLine(@"FVQSP Bvt : Successfully validated the CopyTo() method");
Console.WriteLine(@"FVQSP Bvt : Successfully validated the CopyTo() method");
}