public void FastAFormatterInvalidateFlush()
{
try
{
using (FastAFormatter formatter = new FastAFormatter())
{
formatter.Flush();
Assert.Fail();
}
}
catch (InvalidOperationException ex)
{
ApplicationLog.Write("Fasta P2 : InvalidOperationException caught successfully. " + ex.Message);
}
}
/// <summary>
/// Writes ambiguous reads that are filtered out to the specified file.
/// </summary>
/// <param name="ambiguousReads">Reads with ambiguous symbols.</param>
/// <param name="ambiguousFilename">File to write.</param>
private static void WriteAmbiguousReads(BlockingCollection <ISequence> ambiguousReads, string ambiguousFilename)
{
FastAFormatter formatter = new FastAFormatter(ambiguousFilename);
while (!ambiguousReads.IsCompleted)
{
ISequence seq;
if (ambiguousReads.TryTake(out seq, -1))
{
formatter.Write(seq);
formatter.Flush();
}
}
formatter.Close();
}