protected void Application_Start()
{
#if DEBUG
DyntaxaLogger.WriteMessage("Web application started");
#endif
AreaRegistration.RegisterAllAreas();
RegisterGlobalFilters(GlobalFilters.Filters);
RegisterRoutes(RouteTable.Routes);
// MK 2015-10-12 County map isn't used?
//String path = Server.MapPath("~/Images/Maps/Sverigekarta med län.shp");
//CountyOccurrenceMap.InitializeMap(path);
Configuration.SetInstallationType();
CoreData.CountryManager = new CountryManagerMultiThreadCache();
CoreData.LocaleManager = new LocaleManagerMultiThreadCache();
CoreData.ReferenceManager = new ReferenceManagerMultiThreadCache();
CoreData.TaxonManager = new TaxonManagerMultiThreadCache();
CoreData.UserManager = new UserManagerMultiThreadCache();
CoreData.SpeciesFactManager = new SpeciesFactManagerMultiThreadCache();
UserDataSource.SetDataSource();
TaxonDataSource.SetDataSource();
PesiNameDataSource.SetDataSource();
TaxonAttributeDataSource.SetDataSource();
ReferenceDataSource.SetDataSource();
AnalysisDataSource.SetDataSource();
CoreData.UserManager.LoginApplicationUser();
CoreData.UserManager.LoginApplicationTransactionUser();
ScheduledTasksManager.AddTasks();
}
public static bool SetCurrentUserRoleToTaxonRevisionEditor(this IUserContext user, int revisionId)
{
try
{
ITaxonRevision taxonRevision = CoreData.TaxonManager.GetTaxonRevision(user, revisionId);
return(AuthorizationManager.SetUserRoleToTaxonRevisionEditor(user, taxonRevision.Guid));
}
catch (Exception ex)
{
DyntaxaLogger.WriteException(ex);
return(false);
}
}
/// <summary>
/// Handles the Error event of the Application control.
/// </summary>
/// <param name="sender">The source of the event.</param>
/// <param name="e">The <see cref="System.EventArgs"/> instance containing the event data.</param>
protected void Application_Error(object sender, EventArgs e)
{
Exception exception = Server.GetLastError();
var httpException = exception as HttpException;
Response.Clear();
Server.ClearError();
var routeData = new RouteData();
routeData.Values["controller"] = "Errors";
routeData.Values["action"] = "General";
routeData.Values["exception"] = exception;
Response.StatusCode = 500;
if (httpException != null)
{
Response.StatusCode = httpException.GetHttpCode();
switch (Response.StatusCode)
{
case 400:
routeData.Values["action"] = "Http400";
break;
case 403:
routeData.Values["action"] = "Http403";
break;
case 404:
routeData.Values["action"] = "Http404";
break;
case 500:
routeData.Values["action"] = "Http500";
break;
}
}
// Avoid IIS7 getting in the middle
Response.TrySkipIisCustomErrors = true;
IController errorsController = new ErrorsController();
var wrapper = new HttpContextWrapper(Context);
var rc = new RequestContext(wrapper, routeData);
// Log to file (Debug Level) when http statuscode 500 (Internal Server Error)
if (Response.StatusCode == 500)
{
DyntaxaLogger.WriteDebugException(exception);
}
errorsController.Execute(rc);
}
/// <summary>
/// Updates the cache by getting all relations and all taxa from Taxon service
/// and create a TaxonRelationTree.
/// This method is thread safe.
/// </summary>
/// <param name="userContext">The user context.</param>
public static void UpdateCache(IUserContext userContext)
{
lock (LockingTarget)
{
Debug.WriteLine("Start update Cache {0}", DateTime.Now);
ITaxonSearchCriteria taxonSearchCriteria = new TaxonSearchCriteria();
var allTaxa = CoreData.TaxonManager.GetTaxa(userContext, taxonSearchCriteria);
TaxonRelationSearchCriteria searchCriteria = new TaxonRelationSearchCriteria();
TaxonRelationList allRelations = CoreData.TaxonManager.GetTaxonRelations(userContext, searchCriteria);
TaxonRelationList = allRelations;
CachedTaxonRelationTree = TaxonRelationsTreeManager.CreateTaxonRelationsTree(
userContext,
allRelations,
allTaxa);
CacheLastUpdatedTime = DateTime.Now;
Debug.WriteLine("End update Cache {0}", DateTime.Now);
DyntaxaLogger.WriteMessage("DyntaxaTree updated {0}", DateTime.Now);
}
}
public ActionResult Settings(MatchSettingsViewModel model)
{
CreateMatchSelectLists(model);
if (ModelState.IsValid)
{
var manager = new DyntaxaMatchManager(GetCurrentUser());
List <DyntaxaMatchItem> items;
if (model.MatchToType == MatchTaxonToType.TaxonId)
{
model.LabelForProvidedText = Resources.DyntaxaResource.MatchOptionsOutputProvidedTaxonIdLabel;
}
bool fileFound = false;
if (Request.Files.Count > 0)
{
foreach (string file in Request.Files)
{
HttpPostedFileBase hpf = this.Request.Files[file];
if (hpf == null || hpf.ContentLength == 0)
{
continue;
}
fileFound = true;
string fileExtension = Path.GetExtension(hpf.FileName);
if (fileExtension == ".xls" || fileExtension == ".xlsx")
{
string fileName = GetFileName(fileExtension);
hpf.SaveAs(fileName);
DyntaxaLogger.WriteMessage("Match->Settings saved uploaded file: " + fileName);
model.FileName = fileName;
items = manager.GetMatches(fileName, model);
try
{
if (System.IO.File.Exists(fileName))
{
System.IO.File.Delete(fileName);
DyntaxaLogger.WriteMessage("Match->Settings deleted uploaded file: " + fileName);
}
}
catch
{
DyntaxaLogger.WriteMessage("Match->Settings exception when trying to delete: " + fileName);
}
if (items.IsNotEmpty())
{
Session["MatchOptions"] = model;
Session["MatchItems"] = items;
return(RedirectToAction("MatchItems"));
}
else
{
//TODO: Error. File has no valid content or is not a valid excel file.
}
}
else
{
ViewData.ModelState.AddModelError("FileName", Resources.DyntaxaResource.MatchOptionsFileExtensionError);
}
}
}
if (!fileFound)
{
if (model.ClipBoard.IsNotEmpty())
{
items = manager.GetDyntaxaMatchItemsFromText(model.ClipBoard, model);
if (items.IsNotEmpty())
{
Session["MatchOptions"] = model;
Session["MatchItems"] = items;
return(RedirectToAction("MatchItems"));
}
else
{
//TODO: Error. File has no valid content or is not a valid excel file.
}
}
else
{
//TODO: Handle error when data is missing
}
}
}
return(View(model));
}
protected override void OnActionExecuting(ActionExecutingContext filterContext)
{
if (filterContext.IsChildAction || Request.IsAjaxRequest() || Session == null)
{
return;
}
IUserContext user = GetCurrentUser();
string masterName;
if (Request.QueryString["mode"] != null)
{
if (Request.QueryString["mode"].ToLower() == "full")
{
masterName = "Site";
Session["masterpage"] = masterName;
}
else if (Request.QueryString["mode"].ToLower() == "mini")
{
masterName = "Rest";
Session["masterpage"] = masterName;
}
}
if (Session["masterpage"] != null && (string)Session["masterpage"] == "Rest")
{
ViewBag.MiniMode = true;
}
else
{
ViewBag.MiniMode = false;
}
// set language
if (Request.QueryString["lang"] != null)
{
ILocale locale;
locale = CoreData.LocaleManager.GetUsedLocales(GetCurrentUser()).Get(Request.QueryString["lang"]);
if (locale.IsNotNull())
{
SetLanguage(locale.ISOCode);
if (user.IsAuthenticated())
{
user.Locale = locale;
}
}
}
// Removed from code 2012-02-28 (agoh) only set revision from Revision Controller - start editing
// set revisionId
//string strRevisionId = (filterContext.RouteData.Values["revisionId"] ??
// filterContext.RequestContext.HttpContext.Request.QueryString["revisionId"] ??
// filterContext.RequestContext.HttpContext.Request.Form["revisionId"]) as string;
//int revisionId;
//if (int.TryParse(strRevisionId, out revisionId))
//{
// Session["RevisionId"] = revisionId;
//}
// Set LogOn information
ViewBag.IsLoggedIn = user.IsAuthenticated();
ViewBag.UserName = user.User.UserName;
// Set Taxon and Revision information
ViewBag.TaxonId = this.TaxonIdentifier.Id;
ViewBag.RevisionId = this.RevisionId;
ViewBag.RootTaxonId = this.RootTaxonId;
if (this.RevisionId.HasValue && user.CurrentRole == null)
{
user.SetCurrentUserRoleToTaxonRevisionEditor(this.RevisionId.Value);
}
#if DEBUG
ViewBag.Debug = true;
#else
ViewBag.Debug = false;
#endif
ActionDescriptor actionDescriptor = filterContext.ActionDescriptor;
string actionName = actionDescriptor.ActionName;
string controllerName = actionDescriptor.ControllerDescriptor.ControllerName;
ViewBag.CookieName = string.Format("{0}{1}", controllerName, actionName);
// Log history event
if (actionName != "TaxonQualitySummaryChart")
{
var logEventHistoryItem = new LogEventHistoryItem();
logEventHistoryItem.Action = actionName;
logEventHistoryItem.Controller = controllerName;
logEventHistoryItem.TaxonId = this.TaxonIdentifier.Id;
logEventHistoryItem.RevisionId = this.RevisionId;
logEventHistoryItem.Form = Request.Form != null?Request.Form.PrettyPrint() : "-";
logEventHistoryItem.HttpAction = Request.HttpMethod;
logEventHistoryItem.Url = DyntaxaLogger.GetUrl();
logEventHistoryItem.Date = DateTime.Now;
logEventHistoryItem.UserName = user.User != null ? user.User.UserName : "******";
logEventHistoryItem.UserRole = user.CurrentRole != null ? user.CurrentRole.Identifier : "-";
logEventHistoryItem.Referrer = Request.UrlReferrer != null ? Request.UrlReferrer.OriginalString : "-";
var logEventHistory = Session["LogEventHistory"] as LogEventHistory;
if (logEventHistory == null)
{
logEventHistory = new LogEventHistory();
Session["LogEventHistory"] = logEventHistory;
}
logEventHistory.HistoryItems.Add(logEventHistoryItem);
if (logEventHistory.HistoryItems.Count > 10)
{
logEventHistory.HistoryItems.RemoveAt(0);
}
}
base.OnActionExecuting(filterContext);
}
/// <summary>
/// Method that generate a list of taxon items with the most basic set of parameters.
/// </summary>
/// <returns>Export taxon items.</returns>
private List <ExportTaxonItem> GetExportTaxonItems()
{
Boolean hasOutputTaxonNames;
ExportTaxonItem exportTaxonItem;
Int32 index;
ITaxon taxon;
List <ExportTaxonItem> exportTaxonList;
List <TaxonNameList> allTaxonNames = null;
ArtDatabanken.Data.SpeciesFact speciesFact;
Stopwatch stopwatch;
TaxonCategoryList outputTaxonCategories;
TaxonList filteredTaxa;
stopwatch = new Stopwatch();
stopwatch.Start();
exportTaxonList = new List <ExportTaxonItem>();
hasOutputTaxonNames = HasOutputTaxonNames();
filteredTaxa = _options.GetFilteredTaxa(this._userContext);
outputTaxonCategories = _options.GetOutputTaxonCategories();
if (filteredTaxa.IsNotEmpty())
{
if (hasOutputTaxonNames)
{
allTaxonNames = CoreData.TaxonManager.GetTaxonNames(_userContext, filteredTaxa);
}
for (index = 0; index < filteredTaxa.Count; index++)
{
taxon = filteredTaxa[index];
exportTaxonItem = new ExportTaxonItem(
taxon,
_options.GetTaxonTreeNode(taxon),
outputTaxonCategories);
// Add swedish history information.
if (_options.OutputSwedishHistory)
{
speciesFact = _options.GetSpeciesFact(this._userContext, ArtDatabanken.Data.FactorId.SwedishHistory, exportTaxonItem.Taxon);
if (speciesFact.IsNotNull() &&
speciesFact.MainField.IsNotNull() &&
speciesFact.MainField.EnumValue.IsNotNull())
{
exportTaxonItem.SwedishHistory = speciesFact.MainField.EnumValue.OriginalLabel;
}
}
// Add swedish occurrence information.
if (_options.OutputSwedishOccurrence)
{
speciesFact = _options.GetSpeciesFact(this._userContext, ArtDatabanken.Data.FactorId.SwedishOccurrence, exportTaxonItem.Taxon);
if (speciesFact.IsNotNull() &&
speciesFact.MainField.IsNotNull() &&
speciesFact.MainField.EnumValue.IsNotNull())
{
exportTaxonItem.SwedishOccurrence = speciesFact.MainField.EnumValue.OriginalLabel;
}
}
// Add taxon name information.
if (hasOutputTaxonNames)
{
exportTaxonItem.TaxonNames = allTaxonNames[index];
}
// Synonyms
if (_options.OutputSynonyms)
{
exportTaxonItem.Synonyms = GetSynonyms(taxon);
}
// Synonyms
if (_options.OutputProParteSynonyms)
{
exportTaxonItem.ProParteSynonyms = GetProParteSynonyms(taxon);
}
// Synonyms
if (_options.OutputMisappliedNames)
{
exportTaxonItem.MisappliedNames = GetMisappliedNames(taxon);
}
// Synonyms excl. auktor
//if (_options.OutputExcludeAuctor)
//{
// //exportTaxonItem.MisappliedNames = GetMisappliedNames(taxon);
//}
exportTaxonList.Add(exportTaxonItem);
}
}
stopwatch.Stop();
DyntaxaLogger.WriteMessage("Export: Get all data to populate Excel file: {0:N0} milliseconds", stopwatch.ElapsedMilliseconds);
return(exportTaxonList);
}