public double QueryLongerThanTrack(
double queryMatchStartsAt, double queryLength,
double trackMatchStartsAt, double trackLength,
double coverageWithPermittedGapsLength)
{
return(confidenceCalculator.CalculateConfidence(
queryMatchStartsAt,
queryLength,
trackMatchStartsAt,
trackLength,
coverageWithPermittedGapsLength,
coverageWithPermittedGapsLength,
coverageWithPermittedGapsLength));
}
public void ShouldCalculateConfidence1()
{
// Query Length 2 mins
// Source 30 sec (20 seconds of match available at the begining of the track)
// 20 seconds match
double confidence = confidenceCalculator.CalculateConfidence(0d, 20d, 120d, 10d, 30d);
Assert.AreEqual(1d, confidence, 0.001);
}
public double QueryAndTrackOfEqualLength(
double queryMatchStartsAt, double queryLength,
double trackMatchStartsAt, double trackLength,
double coverageWithPermittedGapsLength)
{
return(ConfidenceCalculator.CalculateConfidence(
queryMatchStartsAt,
queryLength,
trackMatchStartsAt,
trackLength,
coverageWithPermittedGapsLength,
coverageWithPermittedGapsLength,
coverageWithPermittedGapsLength));
}
public double CoveragesOfDifferentLength(
double queryMatchStartsAt, double queryLength,
double trackMatchStartsAt, double trackLength,
double coverageWithPermittedGapsLength,
double queryDiscreteCoverageLength, double trackDiscreteCoverageLength)
{
return(ConfidenceCalculator.CalculateConfidence(
queryMatchStartsAt,
queryLength,
trackMatchStartsAt,
trackLength,
coverageWithPermittedGapsLength,
queryDiscreteCoverageLength,
trackDiscreteCoverageLength));
}
