public static void Annotate(AnnotatedVariant variant)
{
CoreAnnotationProvider.Annotate(variant);
VariantIdProvider.Annotate(variant);
AlleleFreqProvider.Annotate(variant);
ClinicalAnnotationProvider.Annotate(variant);
}
private async void AddClinical()
{
while (await _clinicalChannel.Reader.WaitToReadAsync())
{
while (_clinicalChannel.Reader.TryRead(out var variant))
{
ClinicalAnnotationProvider.Annotate(variant);
}
}
}
private void AddClinicalAnno()
{
while (true)
{
_clinicalSemaphore.Wait();
if (_isComplete)
{
break;
}
ClinicalAnnotationProvider.Annotate(_variant);
_clinicalDone.Release();
}
}
private void AddClinical()
{
while (true)
{
_clinicalConsumer.Wait();
if (!_clinicalQueue.TryDequeue(out var variant))
{
if (_isCancelled)
{
break;
}
continue;
}
ClinicalAnnotationProvider.Annotate(variant);
_clinicalProducer.Release();
}
}
private void AddClinical()
{
while (true)
{
_clinicalSemaphore.Wait();
if (_isCancelled)
{
break;
}
foreach (var variant in _variants)
{
ClinicalAnnotationProvider.Annotate(variant);
}
_clinicalDone.Release();
}
}